Resource
| Id | Histone_ChIP-seq/ENCSR188GJE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR188GJE [biosample_summary="Homo sapiens H9" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN725ZDL|/analyses/ENCAN725ZDL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN725ZDL|/analyses/ENCAN725ZDL/} has in progress subobject document {255f8f20-a7a9-4d75-ad6b-fb259590374b|/documents/255f8f20-a7a9-4d75-ad6b-fb259590374b/} audit_not_compliant: Processed alignments file {ENCFF707PKI|/files/ENCFF707PKI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22883393 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF027JDK|/files/ENCFF027JDK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20735289 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR188GJE | float |
Histone_ChIP-seq_ENCSR188GJE |
Histone_ChIP-seq ENCSR188GJE [biosample_summary="Homo sapiens H9" and target="H3K79me2"]
|
 |
[1.8, 23.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25191145 | 0.78% | 61220 |
| chr1 | 2379800 | 0.96% | 5755 |
| chr2 | 1988327 | 0.82% | 5144 |
| chr3 | 1655986 | 0.84% | 4115 |
| chr4 | 1083702 | 0.57% | 2768 |
| chr5 | 1442016 | 0.79% | 3355 |
| chr6 | 1481466 | 0.87% | 3474 |
| chr7 | 1358800 | 0.85% | 3455 |
| chr8 | 1217450 | 0.84% | 2983 |
| chr9 | 947334 | 0.68% | 2376 |
| chr10 | 1102747 | 0.82% | 2704 |
| chr11 | 1022315 | 0.76% | 2573 |
| chr12 | 1136986 | 0.85% | 2889 |
| chr13 | 611210 | 0.53% | 1610 |
| chr14 | 743169 | 0.69% | 1906 |
| chr15 | 841253 | 0.82% | 2103 |
| chr16 | 894383 | 0.99% | 2000 |
| chr17 | 1030364 | 1.24% | 2417 |
| chr18 | 538156 | 0.67% | 1342 |
| chr19 | 1122437 | 1.91% | 2282 |
| chr20 | 710766 | 1.10% | 1494 |
| chr21 | 364975 | 0.78% | 841 |
| chr22 | 691795 | 1.36% | 1566 |
| chrX | 825708 | 0.53% | 2068 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61220 | 123 | 9892 | 411.49 | 290 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF088QAC.bed.gz | 1.23 MB | 25c8374a72031b2b469818ee16c7b558 |
| ENCFF088QAC.tabix.bed.gz | 604.86 KB | 873fdedb57ad5ba02d8f8883a66e3cbb |
| ENCFF088QAC.tabix.bed.gz.tbi | 121.93 KB | a03a01681adedfd3b595b522cd13434b |
| genomic_resource.yaml | 2.6 KB | 6ba4370f8fdc5e84bca93ad885556e92 |
| statistics/ |