Resource
| Id | Histone_ChIP-seq/ENCSR186QKH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR186QKH [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN995WOZ|/analyses/ENCAN995WOZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN995WOZ|/analyses/ENCAN995WOZ/} has in progress subobject document {345ebd9c-192c-4d77-a3c9-7621a45bc7c6|/documents/345ebd9c-192c-4d77-a3c9-7621a45bc7c6/} audit_not_compliant: Processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12241159 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF421ASP|/files/ENCFF421ASP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR186QKH | float |
Histone_ChIP-seq_ENCSR186QKH |
Histone_ChIP-seq ENCSR186QKH [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K27me3"]
|
 |
[2.11, 6.61] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1060982 | 0.03% | 4322 |
| chr1 | 76813 | 0.03% | 316 |
| chr2 | 87003 | 0.04% | 354 |
| chr3 | 78357 | 0.04% | 320 |
| chr4 | 96930 | 0.05% | 400 |
| chr5 | 71733 | 0.04% | 293 |
| chr6 | 76538 | 0.04% | 312 |
| chr7 | 62874 | 0.04% | 260 |
| chr8 | 62445 | 0.04% | 258 |
| chr9 | 45844 | 0.03% | 191 |
| chr10 | 42424 | 0.03% | 169 |
| chr11 | 45357 | 0.03% | 183 |
| chr12 | 44306 | 0.03% | 181 |
| chr13 | 51287 | 0.04% | 205 |
| chr14 | 34762 | 0.03% | 138 |
| chr15 | 26314 | 0.03% | 105 |
| chr16 | 24290 | 0.03% | 95 |
| chr17 | 22523 | 0.03% | 88 |
| chr18 | 39144 | 0.05% | 162 |
| chr19 | 10300 | 0.02% | 44 |
| chr20 | 19292 | 0.03% | 74 |
| chr21 | 13200 | 0.03% | 54 |
| chr22 | 6221 | 0.01% | 26 |
| chrX | 21479 | 0.01% | 88 |
| chrY | 1546 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 4322 | 180 | 618 | 245.48 | 229 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF123IZT.bed.gz | 70.04 KB | 410eb0046e00ab48d405499a1ceab77e |
| ENCFF123IZT.tabix.bed.gz | 39.23 KB | b358b3eec6827bb7defa48270ba4b3ae |
| ENCFF123IZT.tabix.bed.gz.tbi | 46.95 KB | 5b148e6419457184bc4abc2f35f70f8f |
| genomic_resource.yaml | 3.46 KB | 3fe8e9428512c58618f7388dc4f934e3 |
| statistics/ |