Resource

Id Histone_ChIP-seq/ENCSR185BMKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR185BMK [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR185BMK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:54:31.727546+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR185BMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR185BMK float

Histone_ChIP-seq_ENCSR185BMK
Histone_ChIP-seq ENCSR185BMK [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR185BMK [1.66, 11.8]
n
53,379,031
mean
4.33
sd
1.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 533790311.66% 79725
chr1 2352973 0.95% 3353
chr2 2101317 0.87% 2873
chr3 803742 0.41% 1182
chr4 1117234 0.59% 1354
chr5 1633837 0.90% 2115
chr6 2016089 1.18% 2376
chr7 1604424 1.01% 2017
chr8 1354720 0.93% 2001
chr9 999051 0.72% 1313
chr10 1951562 1.46% 2903
chr11 1308638 0.97% 1990
chr12 1592003 1.19% 2109
chr13 640954 0.56% 884
chr14 1264825 1.18% 1695
chr15 1145511 1.12% 1748
chr16 1424535 1.58% 2181
chr17 1930790 2.32% 2398
chr18 535065 0.67% 808
chr19 1417111 2.42% 1971
chr20 1227981 1.91% 1835
chr21 494010 1.06% 779
chr22 583511 1.15% 986
chrX 23879148 15.30% 38854
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79725 185 35195 669.54 469
global segment-length histogram

Files

Filename Size md5
ENCFF897EFM.bed.gz 1.42 MB 1baa0611b43347609130955d982de2b8
ENCFF897EFM.tabix.bed.gz 752.49 KB b8130ead229a3c5e4094da2e1fb0e059
ENCFF897EFM.tabix.bed.gz.tbi 169.55 KB 1a0b9923947c98089d69396d3003675f
genomic_resource.yaml 1.75 KB 2ec5d855bc424a74f03d507285cbce8c
statistics/