Resource
| Id | Histone_ChIP-seq/ENCSR176WAS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR176WAS [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN675OCI|/analyses/ENCAN675OCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF747NXU|/files/ENCFF747NXU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16091516 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR176WAS | float |
Histone_ChIP-seq_ENCSR176WAS |
Histone_ChIP-seq ENCSR176WAS [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K36me3"]
|
 |
[1.99, 16.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50020703 | 1.55% | 71381 |
| chr1 | 5019660 | 2.02% | 6999 |
| chr1_KI270711v1_random | 450 | 1.07% | 1 |
| chr2 | 3773316 | 1.56% | 5584 |
| chr3 | 3076725 | 1.55% | 4401 |
| chr4 | 1887845 | 0.99% | 2933 |
| chr5 | 2427798 | 1.34% | 3602 |
| chr6 | 2374801 | 1.39% | 3490 |
| chr7 | 2194644 | 1.38% | 3277 |
| chr8 | 1619735 | 1.12% | 2498 |
| chr9 | 2326756 | 1.68% | 3253 |
| chr10 | 2126910 | 1.59% | 3112 |
| chr11 | 2623237 | 1.94% | 3557 |
| chr12 | 2783362 | 2.09% | 3888 |
| chr13 | 910039 | 0.80% | 1430 |
| chr14 | 1720471 | 1.61% | 2493 |
| chr15 | 1860696 | 1.82% | 2692 |
| chr16 | 2313141 | 2.56% | 3124 |
| chr17 | 2906531 | 3.49% | 3935 |
| chr18 | 793946 | 0.99% | 1232 |
| chr19 | 2959128 | 5.05% | 3891 |
| chr20 | 1711484 | 2.66% | 2244 |
| chr21 | 605808 | 1.30% | 860 |
| chr22 | 1416903 | 2.79% | 1820 |
| chrX | 552436 | 0.35% | 1002 |
| chrY | 34881 | 0.06% | 63 |
| 3341 contigs with no values (129034875 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 71381 | 230 | 8360 | 700.76 | 566 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF679XUT.bed.gz | 1.4 MB | 928a6ba27d4cc78f2dee65029c7cea9e |
| ENCFF679XUT.tabix.bed.gz | 711.37 KB | 67543ed8131320fd0789d5e551b4c9fd |
| ENCFF679XUT.tabix.bed.gz.tbi | 159.61 KB | 007a6cb0aee98d676a30de31ce8d1c73 |
| genomic_resource.yaml | 2.01 KB | a5c565d558dc6bac0645a2af999add1a |
| statistics/ |