Resource

Id Histone_ChIP-seq/ENCSR176ABZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR176ABZ [biosample_summary="Homo sapiens HUES6" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR176ABZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007086/
  • biosample_summary: Homo sapiens HUES6
  • date_created: 2015-09-15T19:51:18.787415+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR176ABZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR176ABZ float

Histone_ChIP-seq_ENCSR176ABZ
Histone_ChIP-seq ENCSR176ABZ [biosample_summary="Homo sapiens HUES6" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR176ABZ [1.34, 106]
n
58,706,082
mean
26.6
sd
16.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 587060821.82% 45274
chr1 5596133 2.25% 4244
chr1_KI270713v1_random 2508 6.16% 5
chr1_KI270714v1_random 485 1.16% 2
chr2 4006867 1.65% 3079
chr3 3247158 1.64% 2428
chr4 2516883 1.32% 1917
chr4_GL000008v2_random 2921 1.39% 4
chr5 2970931 1.64% 2239
chr6 3600428 2.11% 2574
chr7 2894041 1.82% 2320
chr8 2301137 1.59% 1751
chr9 2323368 1.68% 1822
chr10 2486199 1.86% 1883
chr11 3052602 2.26% 2329
chr12 3009920 2.26% 2273
chr13 1306072 1.14% 1016
chr14 1905249 1.78% 1415
chr14_KI270722v1_random 216 0.11% 1
chr15 1837846 1.80% 1394
chr16 2123666 2.35% 1700
chr17 3175659 3.81% 2364
chr17_GL000205v2_random 4591 2.47% 5
chr17_KI270729v1_random 10394 3.70% 19
chr17_KI270730v1_random 745 0.66% 2
chr18 1081155 1.35% 843
chr19 3534973 6.03% 2920
chr20 1549597 2.40% 1222
chr21 569261 1.22% 498
chr22 1131348 2.23% 946
chr22_KI270733v1_random 397 0.22% 2
chr22_KI270736v1_random 9099 5.00% 22
chrUn_GL000195v1 207 0.11% 1
chrUn_GL000216v2 11460 6.49% 23
chrUn_GL000219v1 3409 1.90% 3
chrUn_GL000220v1 507 0.31% 2
chrUn_KI270435v1 277 0.30% 1
chrUn_KI270438v1 372 0.33% 1
chrUn_KI270442v1 9657 2.46% 20
chrUn_KI270466v1 510 41.36% 1
chrUn_KI270467v1 1195 30.48% 1
chrUn_KI270519v1 313 0.23% 1
chrUn_KI270589v1 1470 3.31% 3
chrX 2424580 1.55% 1977
chrY 276 <0.01% 1
3322 contigs with no values (126164385 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45274 178 19165 1296.68 863
global segment-length histogram

Files

Filename Size md5
ENCFF146DDP.bed.gz 1.23 MB 059c358b489b5f09f753028ff6fcdf42
ENCFF146DDP.tabix.bed.gz 521.68 KB 1b083a634dd4c5d0eb806a8b6edcaae6
ENCFF146DDP.tabix.bed.gz.tbi 217.03 KB b1a2340037baf76778132cf511d20048
genomic_resource.yaml 1.86 KB 5cd15a3ecffa19653d31b9e898eb73a3
statistics/