Resource
| Id | Histone_ChIP-seq/ENCSR175ABH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR175ABH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN974TVP|/analyses/ENCAN974TVP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 13572357 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF035GMN|/files/ENCFF035GMN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.25. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR175ABH | float |
Histone_ChIP-seq_ENCSR175ABH |
Histone_ChIP-seq ENCSR175ABH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K27ac"]
|
 |
[2.16, 97.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 96898578 | 3.01% | 75314 |
| chr1 | 9655949 | 3.88% | 7307 |
| chr2 | 7493527 | 3.09% | 6035 |
| chr3 | 6801914 | 3.43% | 5195 |
| chr4 | 4343413 | 2.28% | 3475 |
| chr5 | 5326678 | 2.93% | 4184 |
| chr6 | 5570765 | 3.26% | 4487 |
| chr7 | 4304681 | 2.70% | 3474 |
| chr8 | 4088205 | 2.82% | 3359 |
| chr9 | 4030828 | 2.91% | 3124 |
| chr10 | 5325947 | 3.98% | 4032 |
| chr11 | 4758495 | 3.52% | 3688 |
| chr12 | 5244308 | 3.93% | 3936 |
| chr13 | 2481743 | 2.17% | 1992 |
| chr14 | 3001595 | 2.80% | 2358 |
| chr15 | 3529857 | 3.46% | 2763 |
| chr16 | 3079686 | 3.41% | 2431 |
| chr17 | 4828396 | 5.80% | 3451 |
| chr18 | 2017988 | 2.51% | 1629 |
| chr19 | 3468135 | 5.92% | 2532 |
| chr20 | 2475002 | 3.84% | 1897 |
| chr21 | 1040342 | 2.23% | 863 |
| chr22 | 2216814 | 4.36% | 1576 |
| chrX | 1748901 | 1.12% | 1474 |
| chrY | 65409 | 0.11% | 52 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75314 | 195 | 28631 | 1286.59 | 850 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF219NRR.bed.gz | 1.79 MB | 8945fc114bc26e83b276dd75361b58b8 |
| ENCFF219NRR.tabix.bed.gz | 819.1 KB | 8b91fb4a882243bdcefb456d9b82ff1f |
| ENCFF219NRR.tabix.bed.gz.tbi | 243.88 KB | aff462ba85ca3633b2a3215e6447b5aa |
| genomic_resource.yaml | 3.28 KB | f36a1d638be4cba8b8b2dbf358da5662 |
| statistics/ |