Resource
| Id | Histone_ChIP-seq/ENCSR174YDU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR174YDU [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR174YDU | float |
Histone_ChIP-seq_ENCSR174YDU |
Histone_ChIP-seq ENCSR174YDU [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"]
|
 |
[1.49, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 232570055 | 7.23% | 223480 |
| chr1 | 22201548 | 8.92% | 20540 |
| chr1_KI270711v1_random | 5187 | 12.29% | 4 |
| chr2 | 19408610 | 8.01% | 19018 |
| chr3 | 15076079 | 7.60% | 15028 |
| chr4 | 10243277 | 5.39% | 11045 |
| chr5 | 13398492 | 7.38% | 12604 |
| chr6 | 10300482 | 6.03% | 11439 |
| chr7 | 11715568 | 7.35% | 12091 |
| chr8 | 11737958 | 8.09% | 9398 |
| chr9 | 9904589 | 7.16% | 9745 |
| chr10 | 11120042 | 8.31% | 11061 |
| chr11 | 10272178 | 7.60% | 9591 |
| chr12 | 12191127 | 9.15% | 11439 |
| chr13 | 5695856 | 4.98% | 5713 |
| chr14 | 7514769 | 7.02% | 7346 |
| chr14_GL000194v1_random | 1258 | 0.66% | 2 |
| chr15 | 8679544 | 8.51% | 8203 |
| chr16 | 8563050 | 9.48% | 7734 |
| chr17 | 11365407 | 13.65% | 10235 |
| chr17_GL000205v2_random | 3479 | 1.87% | 9 |
| chr18 | 4715001 | 5.87% | 4588 |
| chr19 | 11269481 | 19.23% | 8151 |
| chr20 | 6015830 | 9.33% | 5593 |
| chr21 | 2859512 | 6.12% | 2841 |
| chr22 | 4507654 | 8.87% | 4226 |
| chrUn_GL000195v1 | 4965 | 2.71% | 11 |
| chrUn_GL000219v1 | 26939 | 15.03% | 25 |
| chrUn_KI270435v1 | 340 | 0.37% | 1 |
| chrUn_KI270442v1 | 573 | 0.15% | 2 |
| chrUn_KI270519v1 | 778 | 0.56% | 2 |
| chrX | 3769982 | 2.42% | 5793 |
| chrY | 500 | <0.01% | 2 |
| 3334 contigs with no values (127672551 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 223480 | 250 | 46427 | 1040.68 | 520 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF686YNK.bed.gz | 4.34 MB | 274fcef309a9b3560175a53798c0e173 |
| ENCFF686YNK.tabix.bed.gz | 2.13 MB | 8e914edfa688375671d11adc2693c536 |
| ENCFF686YNK.tabix.bed.gz.tbi | 206.17 KB | 718f85139e1c57ec071b2c3edc6d6eb7 |
| genomic_resource.yaml | 3.12 KB | 6508012b4a58c852274cf2d215d6b00e |
| statistics/ |