Resource

Id Histone_ChIP-seq/ENCSR172LVUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR172LVU [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR172LVU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue male adult (54 years)
  • date_created: 2017-12-06T21:19:19.872784+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR172LVU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR172LVU float

Histone_ChIP-seq_ENCSR172LVU
Histone_ChIP-seq ENCSR172LVU [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR172LVU [1.54, 69.6]
n
40,130,676
mean
30.1
sd
15.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 401306761.25% 24167
chr1 3925654 1.58% 2349
chr1_KI270712v1_random 3027 1.72% 3
chr1_KI270713v1_random 613 1.50% 1
chr1_KI270714v1_random 690 1.65% 1
chr2 2753074 1.14% 1611
chr3 2276242 1.15% 1349
chr4 1702027 0.89% 991
chr5 1899636 1.05% 1110
chr6 2261922 1.32% 1342
chr7 2023677 1.27% 1211
chr8 1489321 1.03% 935
chr9 1687610 1.22% 1025
chr9_KI270717v1_random 915 2.28% 1
chr10 1729518 1.29% 1036
chr11 2164710 1.60% 1259
chr12 2104136 1.58% 1231
chr13 824276 0.72% 528
chr14 1293660 1.21% 757
chr14_GL000194v1_random 484 0.25% 2
chr15 1302149 1.28% 784
chr16 1562812 1.73% 955
chr17 2336751 2.81% 1388
chr17_GL000205v2_random 1989 1.07% 2
chr18 708201 0.88% 444
chr19 2479528 4.23% 1601
chr20 1040824 1.62% 635
chr21 390438 0.84% 251
chr22 909569 1.79% 575
chrUn_GL000195v1 678 0.37% 2
chrUn_GL000218v1 412 0.26% 1
chrUn_GL000219v1 2995 1.67% 3
chrUn_GL000220v1 388 0.24% 1
chrUn_KI270438v1 555 0.49% 1
chrUn_KI270467v1 1342 34.23% 2
chrX 1210563 0.78% 757
chrY 40290 0.07% 23
3330 contigs with no values (127599990 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24167 230 20129 1660.56 1483
global segment-length histogram

Files

Filename Size md5
ENCFF414IQB.bed.gz 690.27 KB 4cc2c9be58cf3affbb3a91acee45a840
ENCFF414IQB.tabix.bed.gz 286.93 KB e34d6b51b4ad8bd73dd36024e11ea0b5
ENCFF414IQB.tabix.bed.gz.tbi 162.25 KB 98fdbf1d188ee3d40d79c69bb429571f
genomic_resource.yaml 1.5 KB 8b0069ff20e2e510397e5e2d50e3a2b4
statistics/