Resource

Id Histone_ChIP-seq/ENCSR172FMHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR172FMH [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR172FMH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-15T20:26:36.287401+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR172FMH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR172FMH float

Histone_ChIP-seq_ENCSR172FMH
Histone_ChIP-seq ENCSR172FMH [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR172FMH [1.68, 252]
n
48,242,463
mean
82.7
sd
55.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 482424631.50% 29902
chr1 4854220 1.95% 2989
chr1_KI270712v1_random 1546 0.88% 2
chr1_KI270713v1_random 2571 6.31% 4
chr1_KI270714v1_random 404 0.97% 1
chr2 3296456 1.36% 2082
chr3 2698875 1.36% 1603
chr4 1974715 1.04% 1217
chr5 2206474 1.22% 1356
chr6 2896014 1.70% 1802
chr7 2289114 1.44% 1446
chr8 1761076 1.21% 1144
chr9 1967980 1.42% 1253
chr10 2049960 1.53% 1337
chr11 2573358 1.90% 1517
chr12 2549367 1.91% 1502
chr13 967441 0.85% 625
chr14 1590055 1.49% 945
chr15 1541421 1.51% 982
chr16 1893141 2.10% 1162
chr17 2828968 3.40% 1693
chr17_GL000205v2_random 3479 1.87% 3
chr18 862793 1.07% 564
chr19 3111439 5.31% 1931
chr20 1240589 1.93% 766
chr21 483545 1.04% 338
chr22 1074923 2.12% 694
chr22_KI270733v1_random 1320 0.73% 2
chrUn_GL000195v1 4864 2.66% 7
chrUn_GL000218v1 258 0.16% 1
chrUn_GL000219v1 4715 2.63% 3
chrUn_GL000220v1 331 0.20% 1
chrX 1446206 0.93% 893
chrY 64845 0.11% 37
3333 contigs with no values (127768174 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29902 255 28336 1613.35 1199
global segment-length histogram

Files

Filename Size md5
ENCFF213QSI.bed.gz 856.54 KB 5316c6134926b84c2b2e71043cd9a780
ENCFF213QSI.tabix.bed.gz 357.47 KB 9948d06bd473c9aca000ee169b63af30
ENCFF213QSI.tabix.bed.gz.tbi 181.49 KB 55d320b0b1ae282321add18f67d1d786
genomic_resource.yaml 1.47 KB 7735051d4621ccb2a269e5e986a0c150
statistics/