Resource

Id Histone_ChIP-seq/ENCSR169CRNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR169CRN [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR169CRN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:04.525694+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR169CRN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR169CRN float

Histone_ChIP-seq_ENCSR169CRN
Histone_ChIP-seq ENCSR169CRN [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR169CRN [1.81, 70.7]
n
59,204,517
mean
27.6
sd
16.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 592045171.84% 33500
chr1 5748590 2.31% 3207
chr2 4146000 1.71% 2367
chr3 3502247 1.77% 1915
chr4 2433506 1.28% 1368
chr5 3005556 1.66% 1683
chr6 3438735 2.01% 1953
chr7 2858920 1.79% 1731
chr8 2346903 1.62% 1326
chr9 2442751 1.77% 1420
chr10 2576381 1.93% 1468
chr11 3191386 2.36% 1710
chr12 3129808 2.35% 1682
chr13 1374087 1.20% 823
chr14 1885949 1.76% 1037
chr15 1853281 1.82% 1072
chr16 2277613 2.52% 1340
chr17 3229306 3.88% 1772
chr18 1126142 1.40% 682
chr19 3548863 6.05% 2024
chr20 1513784 2.35% 871
chr21 593826 1.27% 358
chr22 1311508 2.58% 752
chrX 1669375 1.07% 939
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33500 221 33663 1767.3 1307
global segment-length histogram

Files

Filename Size md5
ENCFF282ILQ.bed.gz 838.88 KB a095072c4c0424803d7f2b878dd5391c
ENCFF282ILQ.tabix.bed.gz 376.14 KB 417159e30599a6dc99763cc30232e4d6
ENCFF282ILQ.tabix.bed.gz.tbi 191.34 KB 79a3cb580c44f68670f7e5d43b60698f
genomic_resource.yaml 1.86 KB 6dba936034ce0daf0ad1d58a3c0c9f78
statistics/