Resource

Id Histone_ChIP-seq/ENCSR166CNRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR166CNR [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR166CNR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (53 years)
  • date_created: 2016-10-19T23:14:08.279908+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR166CNR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR166CNR float

Histone_ChIP-seq_ENCSR166CNR
Histone_ChIP-seq ENCSR166CNR [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR166CNR [1.58, 19.1]
n
227,538,050
mean
5.56
sd
2.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2275380507.07% 96564
chr1 22143601 8.89% 9026
chr1_KI270711v1_random 2870 6.80% 3
chr2 17978504 7.42% 8084
chr3 14737514 7.43% 6587
chr4 9913739 5.21% 4717
chr5 11408757 6.28% 5007
chr6 11001412 6.44% 5249
chr7 10589908 6.65% 5002
chr8 8494745 5.85% 4028
chr9 9972780 7.21% 4366
chr10 10045466 7.51% 4382
chr11 11190798 8.28% 4358
chr12 12114151 9.09% 4735
chr13 5238414 4.58% 2679
chr14 8165059 7.63% 3346
chr15 8730657 8.56% 3642
chr16 9464223 10.48% 3342
chr17 12081244 14.51% 4510
chr17_GL000205v2_random 1080 0.58% 1
chr18 4142655 5.15% 2056
chr19 11448174 19.53% 3684
chr20 6651367 10.32% 2441
chr21 2607722 5.58% 926
chr22 5246308 10.32% 1870
chrUn_GL000195v1 877 0.48% 2
chrUn_GL000219v1 20510 11.45% 21
chrX 4145515 2.66% 2500
3339 contigs with no values (185714605 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96564 290 135848 2356.34 1010
global segment-length histogram

Files

Filename Size md5
ENCFF734ZUD.bed.gz 2.2 MB 030ec80d297fbb80f18d056769b1da21
ENCFF734ZUD.tabix.bed.gz 1.02 MB 3ae81657ff80374b329b9abf975d138f
ENCFF734ZUD.tabix.bed.gz.tbi 149.75 KB a18e892b53d6e48a4476dae401c4f0fd
genomic_resource.yaml 1.5 KB 15a8155dabf139350cee5a0009d02a59
statistics/