Resource
| Id | Histone_ChIP-seq/ENCSR161HZJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR161HZJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN774UTC|/analyses/ENCAN774UTC/} has in progress subobject document {2f3eec46-15c8-489a-b052-8a94ab6410b2|/documents/2f3eec46-15c8-489a-b052-8a94ab6410b2/} audit_internal_action: Released analysis {ENCAN774UTC|/analyses/ENCAN774UTC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF570RLH|/files/ENCFF570RLH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 18535269 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF938FTW|/files/ENCFF938FTW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 33066155 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR161HZJ | float |
Histone_ChIP-seq_ENCSR161HZJ |
Histone_ChIP-seq ENCSR161HZJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K4me1"]
|
 |
[1.6, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 172052140 | 5.35% | 120991 |
| chr1 | 17370276 | 6.98% | 11690 |
| chr2 | 14355819 | 5.93% | 10073 |
| chr3 | 12835284 | 6.47% | 8761 |
| chr4 | 7120858 | 3.74% | 5074 |
| chr5 | 9333430 | 5.14% | 6518 |
| chr6 | 10775112 | 6.31% | 7655 |
| chr7 | 8229369 | 5.16% | 6079 |
| chr8 | 7165472 | 4.94% | 5161 |
| chr9 | 7396397 | 5.34% | 5137 |
| chr10 | 9761573 | 7.30% | 6527 |
| chr11 | 8651936 | 6.40% | 6073 |
| chr12 | 7861374 | 5.90% | 5583 |
| chr13 | 3992954 | 3.49% | 2915 |
| chr14 | 5580093 | 5.21% | 4011 |
| chr15 | 6234965 | 6.11% | 4309 |
| chr16 | 6049737 | 6.70% | 4179 |
| chr17 | 8340322 | 10.02% | 5715 |
| chr18 | 3467940 | 4.31% | 2469 |
| chr19 | 4847857 | 8.27% | 3596 |
| chr20 | 4697046 | 7.29% | 3192 |
| chr21 | 1795159 | 3.84% | 1335 |
| chr22 | 4012770 | 7.90% | 2686 |
| chrX | 2098673 | 1.34% | 2153 |
| chrY | 77724 | 0.14% | 100 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 120991 | 218 | 47182 | 1422.02 | 977 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF574XMB.bed.gz | 2.84 MB | 41a76380c32a71fa5a659ec1fb681eaa |
| ENCFF574XMB.tabix.bed.gz | 1.27 MB | 4993001093e36a10bda8f6ccffbd1062 |
| ENCFF574XMB.tabix.bed.gz.tbi | 287.1 KB | 6a224d45f93ec7afc708bce5fc20d84c |
| genomic_resource.yaml | 2.73 KB | cc32e53e02936ffaec9bb789b222c6ff |
| statistics/ |