Resource

Id Histone_ChIP-seq/ENCSR157MPYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR157MPY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR157MPY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2022-05-11T01:54:39.022298+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR157MPY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR157MPY float

Histone_ChIP-seq_ENCSR157MPY
Histone_ChIP-seq ENCSR157MPY [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR157MPY [1.7, 14]
n
46,269,263
mean
4.53
sd
1.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 462692631.44% 58811
chr1 1838658 0.74% 2130
chr2 1759290 0.73% 1920
chr3 669294 0.34% 759
chr4 1003919 0.53% 972
chr5 1342157 0.74% 1383
chr6 1730373 1.01% 1621
chr7 1355705 0.85% 1279
chr8 1061297 0.73% 1230
chr9 824405 0.60% 853
chr10 1531219 1.14% 1731
chr11 937020 0.69% 1052
chr12 1243172 0.93% 1331
chr13 586838 0.51% 602
chr14 1145427 1.07% 1324
chr15 900998 0.88% 1116
chr16 1111065 1.23% 1368
chr17 1584435 1.90% 1570
chr18 493452 0.61% 608
chr19 1330581 2.27% 1512
chr20 954300 1.48% 1139
chr21 444800 0.95% 590
chr22 484171 0.95% 636
chrX 21936462 14.06% 32084
chrY 225 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58811 190 48929 786.75 553
global segment-length histogram

Files

Filename Size md5
ENCFF416CCS.bed.gz 1.04 MB a7e3d74edee33bffc00fb0460d115ca0
ENCFF416CCS.tabix.bed.gz 559.29 KB cdb8b11695fb2987073799b9dda47922
ENCFF416CCS.tabix.bed.gz.tbi 136.25 KB e2e8dac12008ad7c0762bfb21a264b1f
genomic_resource.yaml 1.71 KB d177cb88341c99e6f8d1ec69734565e2
statistics/