Resource
| Id | Histone_ChIP-seq/ENCSR150MZT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR150MZT [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN706RFE|/analyses/ENCAN706RFE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN706RFE|/analyses/ENCAN706RFE/} has in progress subobject document {de3fd817-8225-41ca-8192-36142e8d49f0|/documents/de3fd817-8225-41ca-8192-36142e8d49f0/} audit_not_compliant: Processed alignments file {ENCFF264PJP|/files/ENCFF264PJP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30264250 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR150MZT | float |
Histone_ChIP-seq_ENCSR150MZT |
Histone_ChIP-seq ENCSR150MZT [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K36me3"]
|
 |
[1.89, 18] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 107963642 | 3.36% | 174914 |
| chr1 | 10739497 | 4.31% | 17305 |
| chr2 | 7740918 | 3.20% | 14177 |
| chr3 | 6321126 | 3.19% | 11207 |
| chr4 | 3611033 | 1.90% | 6961 |
| chr5 | 4630762 | 2.55% | 8570 |
| chr6 | 4641007 | 2.72% | 8428 |
| chr7 | 5029119 | 3.16% | 8302 |
| chr8 | 3205163 | 2.21% | 5960 |
| chr9 | 5005291 | 3.62% | 7670 |
| chr10 | 4830435 | 3.61% | 8532 |
| chr11 | 5731347 | 4.24% | 8753 |
| chr12 | 5786034 | 4.34% | 8994 |
| chr13 | 2028552 | 1.77% | 4036 |
| chr14 | 3727377 | 3.48% | 6355 |
| chr15 | 3911857 | 3.84% | 6736 |
| chr16 | 5314984 | 5.88% | 7011 |
| chr17 | 6964993 | 8.37% | 9676 |
| chr18 | 1533274 | 1.91% | 3107 |
| chr19 | 7427404 | 12.67% | 8817 |
| chr20 | 3635991 | 5.64% | 5277 |
| chr21 | 1266743 | 2.71% | 1980 |
| chr22 | 3472389 | 6.83% | 4469 |
| chrX | 1408346 | 0.90% | 2591 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 174914 | 165 | 16926 | 617.24 | 422 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF495BIY.bed.gz | 3.13 MB | 5f3fb7707b8ec01b8b66ecfe266858d0 |
| ENCFF495BIY.tabix.bed.gz | 1.61 MB | 073dfbd420a8cc43fb71c1cc15c391e4 |
| ENCFF495BIY.tabix.bed.gz.tbi | 200.95 KB | 3ab7dd8d8cbfc3047c72dd44429146c6 |
| genomic_resource.yaml | 2.23 KB | e903bb6a70ce95e5ac1c792fa9ae1e7e |
| statistics/ |