Resource

Id Histone_ChIP-seq/ENCSR150GWJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR150GWJ [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR150GWJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:08.632578+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR150GWJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR150GWJ float

Histone_ChIP-seq_ENCSR150GWJ
Histone_ChIP-seq ENCSR150GWJ [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR150GWJ [1.7, 17.6]
n
59,337,528
mean
5.31
sd
1.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 593375281.84% 113296
chr1 6231647 2.50% 11341
chr2 4730609 1.95% 8980
chr3 3733819 1.88% 7424
chr4 2300263 1.21% 4739
chr5 3258641 1.80% 6343
chr6 3314685 1.94% 6568
chr7 2724013 1.71% 5531
chr8 2266048 1.56% 4523
chr9 3009610 2.17% 5612
chr10 3503697 2.62% 6313
chr11 3835668 2.84% 6997
chr12 2487426 1.87% 4887
chr13 1374972 1.20% 2788
chr14 2158493 2.02% 4089
chr15 2204708 2.16% 4199
chr16 2029442 2.25% 3875
chr17 3080391 3.70% 5515
chr18 1275030 1.59% 2538
chr19 1716456 2.93% 3204
chr20 1725963 2.68% 3123
chr21 580994 1.24% 1191
chr22 1395299 2.75% 2485
chrX 399654 0.26% 1031
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113296 165 9612 523.74 408
global segment-length histogram

Files

Filename Size md5
ENCFF966OFJ.bed.gz 2.26 MB 4dda855dafb8cad0ece4fa853e13decf
ENCFF966OFJ.tabix.bed.gz 1.1 MB 0d61e6af1f194762c0d6a8e476393416
ENCFF966OFJ.tabix.bed.gz.tbi 303.3 KB f69687ee09f708c2372514fe8ddaea30
genomic_resource.yaml 2.02 KB b0aea00dbadb48d60ac805fd0651bcc7
statistics/