Resource

Id Histone_ChIP-seq/ENCSR147VUCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR147VUC [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR147VUC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:42.679807+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR147VUC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR147VUC float

Histone_ChIP-seq_ENCSR147VUC
Histone_ChIP-seq ENCSR147VUC [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR147VUC [1.79, 65.6]
n
76,557,990
mean
25.3
sd
15.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 765579902.38% 40364
chr1 7414317 2.98% 3782
chr2 5482198 2.26% 2999
chr3 4619007 2.33% 2393
chr4 3275662 1.72% 1795
chr5 4031916 2.22% 2094
chr6 4471168 2.62% 2383
chr7 3795636 2.38% 2106
chr8 3139438 2.16% 1679
chr9 3194451 2.31% 1722
chr10 3391190 2.53% 1849
chr11 4079454 3.02% 2061
chr12 4010401 3.01% 1996
chr13 1874373 1.64% 1046
chr14 2427413 2.27% 1258
chr15 2393059 2.35% 1287
chr16 2832348 3.14% 1496
chr17 4047280 4.86% 2075
chr18 1518435 1.89% 845
chr19 4208076 7.18% 2160
chr20 1895007 2.94% 1028
chr21 789122 1.69% 446
chr22 1648903 3.24% 840
chrX 2019136 1.29% 1024
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40364 260 35177 1896.69 1268
global segment-length histogram

Files

Filename Size md5
ENCFF678JLE.bed.gz 1003.59 KB 827ba413d604c18fa2d773e3d935a14d
ENCFF678JLE.tabix.bed.gz 450.82 KB df791f84db2a96ae97214b5fdb90f4ed
ENCFF678JLE.tabix.bed.gz.tbi 219.94 KB 8f9baeb68bc6dc6e8fe0dbe028b2e69f
genomic_resource.yaml 1.77 KB 21a1c4ac36e653f9c79ff512f89259e9
statistics/