Resource

Id Histone_ChIP-seq/ENCSR146KXZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR146KXZ [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR146KXZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue female embryo (17 weeks)
  • date_created: 2015-09-15T20:27:34.177125+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR146KXZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR146KXZ float

Histone_ChIP-seq_ENCSR146KXZ
Histone_ChIP-seq ENCSR146KXZ [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR146KXZ [1.21, 34.7]
n
64,905,709
mean
5.56
sd
2.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 649057092.02% 126339
chr1 3308960 1.33% 7337
chr1_KI270706v1_random 10427 5.96% 40
chr1_KI270707v1_random 1095 3.42% 3
chr1_KI270708v1_random 9398 7.36% 32
chr1_KI270709v1_random 26132 39.08% 54
chr1_KI270710v1_random 1941 4.83% 8
chr1_KI270712v1_random 2858 1.62% 5
chr1_KI270713v1_random 866 2.13% 2
chr2 3522152 1.45% 8251
chr2_KI270716v1_random 8659 5.63% 7
chr3 3084727 1.56% 7399
chr3_GL000221v1_random 1016 0.65% 6
chr4 3072185 1.62% 7015
chr4_GL000008v2_random 7185 3.43% 9
chr5 3602819 1.98% 7382
chr5_GL000208v1_random 25069 27.05% 28
chr6 2712256 1.59% 6345
chr7 4603384 2.89% 7978
chr8 3344927 2.30% 6009
chr9 1926313 1.39% 4303
chr9_KI270718v1_random 405 1.06% 1
chr9_KI270719v1_random 15426 8.72% 40
chr9_KI270720v1_random 11250 28.81% 24
chr10 3215188 2.40% 5850
chr11 3371670 2.50% 6390
chr12 3217918 2.41% 5635
chr13 1724155 1.51% 3771
chr14 2298023 2.15% 4419
chr14_GL000009v2_random 18089 8.97% 74
chr14_GL000194v1_random 30444 15.90% 79
chr14_GL000225v1_random 129601 61.37% 98
chr14_KI270722v1_random 39674 20.45% 41
chr14_KI270723v1_random 15044 39.47% 27
chr14_KI270724v1_random 16926 42.79% 31
chr14_KI270725v1_random 7475 4.33% 23
chr14_KI270726v1_random 1604 3.67% 5
chr15 1905780 1.87% 3891
chr15_KI270727v1_random 996 0.22% 5
chr16 2074187 2.30% 3186
chr16_KI270728v1_random 30752 1.64% 88
chr17 1494561 1.80% 2588
chr17_GL000205v2_random 62050 33.43% 28
chr17_KI270729v1_random 128536 45.77% 84
chr17_KI270730v1_random 26435 23.49% 9
chr18 1166500 1.45% 2762
chr19 5707059 9.74% 7084
chr20 1628836 2.53% 3199
chr21 1202156 2.57% 2338
chr22 736657 1.45% 1552
chr22_KI270732v1_random 16928 40.75% 38
chr22_KI270733v1_random 11242 6.25% 22
chr22_KI270735v1_random 21603 50.46% 42
chr22_KI270736v1_random 131526 72.30% 82
chr22_KI270737v1_random 4659 4.49% 13
chr22_KI270738v1_random 53927 54.27% 70
chrUn_GL000195v1 378 0.21% 1
chrUn_GL000213v1 542 0.33% 2
chrUn_GL000214v1 5974 4.34% 18
chrUn_GL000216v2 109903 62.23% 113
chrUn_GL000218v1 8749 5.43% 36
chrUn_GL000219v1 13006 7.26% 7
chrUn_GL000220v1 1406 0.87% 7
chrUn_GL000224v1 23855 13.28% 44
chrUn_KI270302v1 174 7.65% 1
chrUn_KI270310v1 308 25.65% 1
chrUn_KI270330v1 176 10.65% 1
chrUn_KI270333v1 126 4.67% 1
chrUn_KI270336v1 142 13.84% 1
chrUn_KI270337v1 340 30.33% 1
chrUn_KI270417v1 491 24.03% 1
chrUn_KI270420v1 449 19.35% 2
chrUn_KI270429v1 798 58.63% 1
chrUn_KI270435v1 23808 25.60% 47
chrUn_KI270438v1 63657 56.58% 47
chrUn_KI270442v1 244384 62.33% 254
chrUn_KI270448v1 4826 60.39% 6
chrUn_KI270465v1 329 18.55% 1
chrUn_KI270466v1 184 14.92% 1
chrUn_KI270467v1 1094 27.91% 2
chrUn_KI270468v1 2328 57.41% 4
chrUn_KI270507v1 4613 86.18% 4
chrUn_KI270508v1 1494 76.58% 2
chrUn_KI270509v1 1603 69.15% 2
chrUn_KI270510v1 1220 50.52% 2
chrUn_KI270511v1 4029 49.58% 3
chrUn_KI270512v1 7053 31.09% 14
chrUn_KI270515v1 4423 69.53% 2
chrUn_KI270516v1 846 65.08% 1
chrUn_KI270517v1 1675 51.49% 3
chrUn_KI270518v1 1400 64.04% 3
chrUn_KI270519v1 77407 56.04% 117
chrUn_KI270521v1 2588 33.87% 5
chrUn_KI270522v1 2944 51.89% 5
chrUn_KI270538v1 31639 34.65% 32
chrUn_KI270580v1 698 44.95% 2
chrUn_KI270583v1 886 63.29% 1
chrUn_KI270584v1 3726 82.56% 4
chrUn_KI270587v1 1776 59.82% 2
chrUn_KI270588v1 4320 70.15% 4
chrUn_KI270589v1 3650 8.21% 3
chrUn_KI270590v1 3784 80.77% 6
chrUn_KI270591v1 4424 76.33% 4
chrUn_KI270593v1 1225 40.28% 5
chrUn_KI270741v1 281 0.18% 1
chrUn_KI270742v1 9975 5.34% 34
chrUn_KI270743v1 3393 1.61% 15
chrUn_KI270744v1 33219 19.72% 68
chrUn_KI270746v1 19053 28.66% 48
chrUn_KI270747v1 1231 0.62% 1
chrUn_KI270749v1 11886 7.49% 42
chrUn_KI270750v1 22060 14.82% 41
chrUn_KI270751v1 21877 14.51% 50
chrUn_KI270753v1 874 1.39% 3
chrUn_KI270754v1 1395 3.47% 6
chrUn_KI270756v1 10011 12.58% 9
chrUn_KI270757v1 17926 25.16% 26
chrX 4222101 2.71% 9237
chrY 65926 0.12% 130
3248 contigs with no values (118861418 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126339 125 75924 513.74 343
global segment-length histogram

Files

Filename Size md5
ENCFF626JFL.bed.gz 2.23 MB 611a677406996edae87099a482f8acb1
ENCFF626JFL.tabix.bed.gz 1.15 MB 13b90098fad4bbffc85b3ad9433c1f80
ENCFF626JFL.tabix.bed.gz.tbi 355.5 KB 2a9dc7b3196197292f7679da886c25c0
genomic_resource.yaml 2.49 KB 4cb217080d8f7adf5c4b9c159e84c442
statistics/