Resource

Id Histone_ChIP-seq/ENCSR144NDEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR144NDE [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR144NDE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000305/
  • biosample_summary: Homo sapiens amnion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:30.017382+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR144NDE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR144NDE float

Histone_ChIP-seq_ENCSR144NDE
Histone_ChIP-seq ENCSR144NDE [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR144NDE [1.97, 17]
n
16,285,899
mean
6.1
sd
2.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162858990.51% 19537
chr1 1629591 0.65% 2038
chr1_KI270713v1_random 4558 11.19% 3
chr2 1181324 0.49% 1314
chr3 672465 0.34% 832
chr4 643669 0.34% 717
chr5 921219 0.51% 1103
chr6 931898 0.55% 1128
chr7 855751 0.54% 926
chr8 633977 0.44% 752
chr9 783889 0.57% 917
chr10 1021204 0.76% 1199
chr11 904923 0.67% 1159
chr12 767474 0.58% 937
chr13 386182 0.34% 445
chr14 495854 0.46% 577
chr15 450807 0.44% 543
chr16 597856 0.66% 712
chr17 1090535 1.31% 1338
chr17_GL000205v2_random 467 0.25% 1
chr18 225093 0.28% 278
chr19 867586 1.48% 1045
chr20 612727 0.95% 755
chr21 172582 0.37% 202
chr22 358372 0.71% 480
chr22_KI270733v1_random 2189 1.22% 6
chrUn_GL000220v1 319 0.20% 1
chrX 73388 0.05% 129
3339 contigs with no values (185736590 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19537 200 16242 833.59 516
global segment-length histogram

Files

Filename Size md5
ENCFF596LNA.bed.gz 356.84 KB df0d86edccb5608d1f907cf1ab000aa0
ENCFF596LNA.tabix.bed.gz 189.33 KB a8df68dfd6630658e59a2084f0575cc7
ENCFF596LNA.tabix.bed.gz.tbi 73.1 KB 6b256447dfb1da081eb67964cc53950a
genomic_resource.yaml 1.99 KB 89a340644c1ce40c833f50986d22ab48
statistics/