Resource
| Id | Histone_ChIP-seq/ENCSR143XNJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR143XNJ [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN175JLX|/analyses/ENCAN175JLX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN175JLX|/analyses/ENCAN175JLX/} has in progress subobject document {9471c651-34c3-47ed-9c6a-5850a1d11e59|/documents/9471c651-34c3-47ed-9c6a-5850a1d11e59/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF700AIF|/files/ENCFF700AIF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR143XNJ | float |
Histone_ChIP-seq_ENCSR143XNJ |
Histone_ChIP-seq ENCSR143XNJ [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K27ac"]
|
 |
[1.66, 74] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 166693855 | 5.18% | 94425 |
| chr1 | 17147622 | 6.89% | 9176 |
| chr2 | 13076010 | 5.40% | 7550 |
| chr3 | 10549296 | 5.32% | 6039 |
| chr4 | 6389473 | 3.36% | 4027 |
| chr5 | 7692494 | 4.24% | 4620 |
| chr6 | 9185242 | 5.38% | 5432 |
| chr7 | 7271331 | 4.56% | 4484 |
| chr8 | 6600433 | 4.55% | 4069 |
| chr9 | 7822515 | 5.65% | 4303 |
| chr10 | 8694349 | 6.50% | 4936 |
| chr11 | 8535863 | 6.32% | 4486 |
| chr12 | 8231587 | 6.18% | 4569 |
| chr13 | 3653845 | 3.19% | 2266 |
| chr14 | 5837114 | 5.45% | 3072 |
| chr15 | 5930055 | 5.81% | 3402 |
| chr16 | 6347532 | 7.03% | 3482 |
| chr17 | 9157255 | 11.00% | 4674 |
| chr18 | 3166633 | 3.94% | 1955 |
| chr19 | 6697693 | 11.43% | 3320 |
| chr20 | 4938582 | 7.66% | 2746 |
| chr21 | 2155776 | 4.62% | 1305 |
| chr22 | 4155800 | 8.18% | 2121 |
| chrX | 3332853 | 2.14% | 2279 |
| chrY | 124502 | 0.22% | 112 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94425 | 210 | 73126 | 1765.36 | 1150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF847EPP.bed.gz | 2.29 MB | 417296ce2e1b251591318e3c500f331c |
| ENCFF847EPP.tabix.bed.gz | 1.01 MB | 91c54d978eda49c1c90b6fd191438166 |
| ENCFF847EPP.tabix.bed.gz.tbi | 278.31 KB | d54b2fb8b0600939c138da3e187e18d5 |
| genomic_resource.yaml | 2.42 KB | 329802af62a700f3b742b603f81a55c3 |
| statistics/ |