Resource

Id Histone_ChIP-seq/ENCSR136ZLJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR136ZLJ [biosample_summary="Homo sapiens ectodermal cell originated from HUES64" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR136ZLJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000221/
  • biosample_summary: Homo sapiens ectodermal cell originated from HUES64
  • date_created: 2015-09-15T19:47:20.623006+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR136ZLJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR136ZLJ float

Histone_ChIP-seq_ENCSR136ZLJ
Histone_ChIP-seq ENCSR136ZLJ [biosample_summary="Homo sapiens ectodermal cell originated from HUES64" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR136ZLJ [1.88, 92.4]
n
72,178,996
mean
6.07
sd
1.98

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 721789962.24% 93147
chr1 7664582 3.08% 9373
chr2 5711477 2.36% 7537
chr3 4471288 2.25% 5833
chr4 2839614 1.49% 3823
chr5 3994264 2.20% 5219
chr6 3908394 2.29% 5246
chr7 3221265 2.02% 4287
chr8 2943364 2.03% 4008
chr9 3464097 2.50% 4360
chr10 3633683 2.72% 4712
chr11 4543083 3.36% 5612
chr12 3559281 2.67% 4602
chr13 1702151 1.49% 2345
chr14 2445558 2.28% 3157
chr15 2713775 2.66% 3384
chr16 2635509 2.92% 3326
chr17 3852988 4.63% 4620
chr18 1793470 2.23% 2381
chr19 1793444 3.06% 2355
chr20 2185803 3.39% 2803
chr21 725172 1.55% 963
chr22 1783661 3.51% 2200
chrX 585473 0.38% 986
chrY 7600 0.01% 15
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93147 195 10069 774.89 631
global segment-length histogram

Files

Filename Size md5
ENCFF778EBE.bed.gz 1.7 MB 23b2dbe34e7da53fa184094d4472864e
ENCFF778EBE.tabix.bed.gz 903.23 KB 9f6bcb8081f6e168f8910204a5c7b7b1
ENCFF778EBE.tabix.bed.gz.tbi 330.97 KB c4bc9ef1b9c59d657b1460fa6a06724b
genomic_resource.yaml 1.99 KB 69723eebc86ea2832df3603f9a4dda92
statistics/