Resource
| Id | Histone_ChIP-seq/ENCSR136VLK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR136VLK [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN137XIL|/analyses/ENCAN137XIL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF456KBT|/files/ENCFF456KBT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 30206807 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR136VLK | float |
Histone_ChIP-seq_ENCSR136VLK |
Histone_ChIP-seq ENCSR136VLK [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K27me3"]
|
 |
[1.42, 47.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22224173 | 0.69% | 36394 |
| chr1 | 2043108 | 0.82% | 3219 |
| chr1_KI270712v1_random | 1728 | 0.98% | 4 |
| chr1_KI270713v1_random | 1429 | 3.51% | 3 |
| chr1_KI270714v1_random | 262 | 0.63% | 1 |
| chr2 | 1215718 | 0.50% | 2006 |
| chr3 | 649531 | 0.33% | 1076 |
| chr4 | 794755 | 0.42% | 1141 |
| chr5 | 923763 | 0.51% | 1429 |
| chr6 | 663435 | 0.39% | 1079 |
| chr7 | 921222 | 0.58% | 1416 |
| chr8 | 921617 | 0.63% | 1409 |
| chr9 | 951616 | 0.69% | 1429 |
| chr10 | 1045718 | 0.78% | 1619 |
| chr11 | 1052948 | 0.78% | 1729 |
| chr12 | 831524 | 0.62% | 1349 |
| chr13 | 475179 | 0.42% | 712 |
| chr14 | 541239 | 0.51% | 845 |
| chr14_KI270726v1_random | 1191 | 2.72% | 3 |
| chr15 | 461103 | 0.45% | 779 |
| chr16 | 914159 | 1.01% | 1357 |
| chr17 | 1325882 | 1.59% | 1988 |
| chr17_GL000205v2_random | 9169 | 4.94% | 11 |
| chr18 | 300614 | 0.37% | 518 |
| chr19 | 1108535 | 1.89% | 1739 |
| chr20 | 1244233 | 1.93% | 1951 |
| chr21 | 294919 | 0.63% | 475 |
| chr22 | 815057 | 1.60% | 1382 |
| chr22_KI270733v1_random | 4464 | 2.48% | 9 |
| chr22_KI270738v1_random | 524 | 0.53% | 1 |
| chrUn_GL000218v1 | 469 | 0.29% | 1 |
| chrUn_GL000219v1 | 1425 | 0.80% | 3 |
| chrUn_GL000224v1 | 422 | 0.23% | 1 |
| chrUn_KI270466v1 | 376 | 30.49% | 1 |
| chrUn_KI270467v1 | 1184 | 30.20% | 2 |
| chrUn_KI270744v1 | 425 | 0.25% | 1 |
| chrX | 2704967 | 1.73% | 5705 |
| chrY | 263 | <0.01% | 1 |
| 3329 contigs with no values (127616440 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36394 | 160 | 9372 | 610.65 | 458 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF859IBJ.bed.gz | 737.88 KB | 12bde0c1c53c7b05e517cba28841f6a2 |
| ENCFF859IBJ.tabix.bed.gz | 368.4 KB | 3fb2cbb4a2467759f4384cc4de4ef4fd |
| ENCFF859IBJ.tabix.bed.gz.tbi | 128.16 KB | 17f874e10b3790ba379286e6997a82d0 |
| genomic_resource.yaml | 2.01 KB | ea143540816f44aea02aa9d25c36b093 |
| statistics/ |