Resource

Id Histone_ChIP-seq/ENCSR135AYCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR135AYC [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR135AYC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:42.905253+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR135AYC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR135AYC float

Histone_ChIP-seq_ENCSR135AYC
Histone_ChIP-seq ENCSR135AYC [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR135AYC [1.73, 29.3]
n
52,135,281
mean
12.6
sd
5.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 521352811.62% 33234
chr1 5047580 2.03% 3166
chr2 3624796 1.50% 2355
chr3 3152619 1.59% 1920
chr4 2146813 1.13% 1354
chr5 2625445 1.45% 1621
chr6 3085837 1.81% 1929
chr7 2497578 1.57% 1701
chr8 2066150 1.42% 1319
chr9 2158237 1.56% 1440
chr10 2287774 1.71% 1474
chr11 2835468 2.10% 1725
chr12 2737496 2.05% 1625
chr13 1221629 1.07% 812
chr14 1708126 1.60% 1088
chr15 1627126 1.60% 1064
chr16 1978610 2.19% 1314
chr17 2848820 3.42% 1787
chr18 987680 1.23% 675
chr19 3140580 5.36% 1976
chr20 1316507 2.04% 877
chr21 492323 1.05% 327
chr22 1125654 2.22% 750
chrX 1422433 0.91% 935
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33234 225 20647 1568.73 1208
global segment-length histogram

Files

Filename Size md5
ENCFF006JBO.bed.gz 775.55 KB 01d3c0f9897553f75e69b67b64846024
ENCFF006JBO.tabix.bed.gz 362.94 KB 42e01d2f4bb638e43b2cd16c1c70d8c1
ENCFF006JBO.tabix.bed.gz.tbi 188.05 KB 428288d730b65bdbe29fd7477ab579be
genomic_resource.yaml 1.75 KB 606e3806065b3b0585a8f1db9a8f8ae0
statistics/