Resource

Id Histone_ChIP-seq/ENCSR134KZXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR134KZX [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR134KZX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)
  • date_created: 2019-04-27T23:15:39.925692+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR134KZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR134KZX float

Histone_ChIP-seq_ENCSR134KZX
Histone_ChIP-seq ENCSR134KZX [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR134KZX [1.58, 20.5]
n
230,975,912
mean
6.01
sd
2.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2309759127.18% 135787
chr1 22838769 9.17% 12869
chr2 19033727 7.86% 11221
chr3 16585300 8.36% 9839
chr4 10298959 5.41% 6760
chr5 11759946 6.48% 7355
chr6 12366807 7.24% 8101
chr7 11284394 7.08% 7068
chr8 9796919 6.75% 6092
chr9 10680212 7.72% 6041
chr10 13224010 9.88% 7339
chr11 12009208 8.89% 6651
chr12 11714981 8.79% 6853
chr13 5412494 4.73% 3311
chr14 8043781 7.51% 4512
chr15 8306703 8.14% 4782
chr16 7557835 8.37% 4169
chr17 10958056 13.16% 5689
chr18 4453378 5.54% 2916
chr19 7564753 12.91% 4074
chr20 6323710 9.81% 3595
chr21 2455814 5.26% 1474
chr22 5152138 10.14% 2654
chrX 3087990 1.98% 2363
chrY 66028 0.12% 59
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 135787 235 81974 1701.02 1164
global segment-length histogram

Files

Filename Size md5
ENCFF491SNS.bed.gz 3.13 MB 609f56cb635cd57096e1fddcf2528bc3
ENCFF491SNS.tabix.bed.gz 1.41 MB afd7037d1a491ac59bbf195e56642b4f
ENCFF491SNS.tabix.bed.gz.tbi 316.05 KB f1c23989cbf755b88f9ba82b6c661b38
genomic_resource.yaml 1.55 KB 4bd64f91a22c6bb28d998bec3939e8bf
statistics/