Resource
| Id | Histone_ChIP-seq/ENCSR133QBG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR133QBG [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K9me3"] |
| Description |
status: archived biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN300CDK|/analyses/ENCAN300CDK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF818MCL|/files/ENCFF818MCL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 43322681 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR133QBG | float |
Histone_ChIP-seq_ENCSR133QBG |
Histone_ChIP-seq ENCSR133QBG [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K9me3"]
|
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[1.24, 4.91] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 79736 | <0.01% | 337 |
| chr1 | 4993 | <0.01% | 19 |
| chr2 | 4468 | <0.01% | 19 |
| chr3 | 7384 | <0.01% | 33 |
| chr4 | 5669 | <0.01% | 24 |
| chr5 | 5585 | <0.01% | 26 |
| chr6 | 6043 | <0.01% | 25 |
| chr7 | 6706 | <0.01% | 28 |
| chr8 | 4171 | <0.01% | 17 |
| chr9 | 2918 | <0.01% | 12 |
| chr10 | 3798 | <0.01% | 15 |
| chr11 | 2598 | <0.01% | 11 |
| chr12 | 3005 | <0.01% | 13 |
| chr13 | 3576 | <0.01% | 16 |
| chr14 | 1818 | <0.01% | 8 |
| chr15 | 2169 | <0.01% | 11 |
| chr16 | 2229 | <0.01% | 10 |
| chr17 | 1371 | <0.01% | 6 |
| chr18 | 1434 | <0.01% | 7 |
| chr19 | 5504 | 0.01% | 18 |
| chr20 | 1407 | <0.01% | 7 |
| chr21 | 2140 | <0.01% | 9 |
| chr22 | 169 | <0.01% | 1 |
| chrY | 581 | <0.01% | 2 |
| 3343 contigs with no values (285117980 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 337 | 120 | 700 | 236.61 | 218 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF414ESK.bed.gz | 7.13 KB | 58f4d6bdd7b7754534b58e148d1e31bf |
| ENCFF414ESK.tabix.bed.gz | 3.71 KB | 0e4d441eae81a298e33e5e2b74aafde3 |
| ENCFF414ESK.tabix.bed.gz.tbi | 7.88 KB | f649e4bca6c4f358bd822218d31c177b |
| genomic_resource.yaml | 1.98 KB | bac8d5d3b28c4ae4d9a1a72df8d7db3d |
| statistics/ |
