Resource

Id Histone_ChIP-seq/ENCSR128QKMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR128QKM [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR128QKM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue female embryo (110 days)
  • date_created: 2015-09-16T21:42:35.393460+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR128QKM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (110 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR128QKM float

Histone_ChIP-seq_ENCSR128QKM
Histone_ChIP-seq ENCSR128QKM [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR128QKM [1.91, 87.9]
n
34,186,705
mean
35
sd
19.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 341867051.06% 29452
chr1 3356483 1.35% 2885
chr2 2339858 0.97% 1980
chr3 1928904 0.97% 1559
chr4 1407350 0.74% 1138
chr5 1609791 0.89% 1283
chr6 2011098 1.18% 1631
chr7 1673944 1.05% 1478
chr8 1287349 0.89% 1107
chr9 1384635 1.00% 1222
chr10 1463718 1.09% 1245
chr11 1923550 1.42% 1611
chr12 1834215 1.38% 1498
chr13 707617 0.62% 617
chr14 1112603 1.04% 945
chr15 1091248 1.07% 959
chr16 1252088 1.39% 1144
chr17 1999556 2.40% 1781
chr18 587664 0.73% 529
chr19 2141744 3.65% 2017
chr20 868545 1.35% 779
chr21 338567 0.72% 321
chr22 694026 1.37% 667
chrX 1171597 0.75% 1055
chrY 555 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29452 165 11055 1160.76 930
global segment-length histogram

Files

Filename Size md5
ENCFF027HBT.bed.gz 734.73 KB 3a374d8acb85be84c0db363638d4ee73
ENCFF027HBT.tabix.bed.gz 328.73 KB 1968c516d0a7450989956d2867855256
ENCFF027HBT.tabix.bed.gz.tbi 155.61 KB 0cb6812e3972682b4d6c812fbc88cf37
genomic_resource.yaml 1.52 KB 0604a218be88c29780d45a8558e4bd5e
statistics/