Resource
| Id | Histone_ChIP-seq/ENCSR123OMJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR123OMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN107ZNJ|/analyses/ENCAN107ZNJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF598EXA|/files/ENCFF598EXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF598EXA|/files/ENCFF598EXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR123OMJ | float |
Histone_ChIP-seq_ENCSR123OMJ |
Histone_ChIP-seq ENCSR123OMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)" and target="H3K4me3"]
|
 |
[2.05, 89.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50283760 | 1.56% | 28396 |
| chr1 | 4959093 | 1.99% | 2768 |
| chr2 | 3409617 | 1.41% | 1920 |
| chr3 | 2967205 | 1.50% | 1603 |
| chr4 | 2128002 | 1.12% | 1171 |
| chr5 | 2482846 | 1.37% | 1346 |
| chr6 | 2954398 | 1.73% | 1614 |
| chr7 | 2467590 | 1.55% | 1441 |
| chr8 | 1953275 | 1.35% | 1110 |
| chr9 | 2089755 | 1.51% | 1220 |
| chr10 | 2239028 | 1.67% | 1263 |
| chr11 | 2667628 | 1.97% | 1458 |
| chr12 | 2676457 | 2.01% | 1438 |
| chr13 | 1121691 | 0.98% | 667 |
| chr14 | 1552972 | 1.45% | 852 |
| chr15 | 1634558 | 1.60% | 920 |
| chr16 | 1885306 | 2.09% | 1127 |
| chr17 | 2791984 | 3.35% | 1543 |
| chr18 | 919379 | 1.14% | 550 |
| chr19 | 3003027 | 5.12% | 1788 |
| chr20 | 1282606 | 1.99% | 767 |
| chr21 | 478922 | 1.03% | 283 |
| chr22 | 1092377 | 2.15% | 646 |
| chrX | 1471300 | 0.94% | 873 |
| chrY | 54744 | 0.10% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28396 | 258 | 17989 | 1770.8 | 1448 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF796YQI.bed.gz | 757.03 KB | 14678c03fc2c3c1e408849340ee022b5 |
| ENCFF796YQI.tabix.bed.gz | 328.71 KB | 344ea748ca568a22296b2ecc93bb7bb0 |
| ENCFF796YQI.tabix.bed.gz.tbi | 176.95 KB | fa8018004ddbb7a6cc8b8ddd18efc543 |
| genomic_resource.yaml | 2.79 KB | c6a9573d2fe1e7bba482d29f7f3a4552 |
| statistics/ |