Resource

Id Histone_ChIP-seq/ENCSR121INCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR121INC [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR121INC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2015-02-25T19:09:02.808972+00:00
  • date_released: 2017-01-12
  • doi: 10.17989/ENCSR121INC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR121INC float

Histone_ChIP-seq_ENCSR121INC
Histone_ChIP-seq ENCSR121INC [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR121INC [1.32, 55.4]
n
49,955,256
mean
12
sd
8.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 499552561.55% 42209
chr1 4941940 1.99% 4151
chr1_KI270713v1_random 268 0.66% 1
chr2 3864027 1.60% 3268
chr3 3148735 1.59% 2683
chr4 2216949 1.17% 1921
chr5 2847306 1.57% 2354
chr6 2995961 1.75% 2457
chr7 2617833 1.64% 2227
chr8 1971364 1.36% 1775
chr9 2067900 1.49% 1771
chr10 2306741 1.72% 2009
chr11 2791765 2.07% 2190
chr12 2786993 2.09% 2285
chr13 1075979 0.94% 973
chr14 1548516 1.45% 1300
chr14_GL000009v2_random 812 0.40% 2
chr14_GL000194v1_random 389 0.20% 1
chr14_GL000225v1_random 740 0.35% 1
chr14_KI270722v1_random 970 0.50% 1
chr15 1730279 1.70% 1460
chr16 1644847 1.82% 1385
chr17 2627112 3.16% 2157
chr17_GL000205v2_random 1300 0.70% 2
chr18 836809 1.04% 731
chr19 2165967 3.70% 1816
chr20 1189700 1.85% 1017
chr21 480550 1.03% 439
chr22 882606 1.74% 762
chrUn_GL000195v1 1188 0.65% 2
chrUn_GL000219v1 1941 1.08% 3
chrUn_KI270438v1 964 0.86% 2
chrUn_KI270442v1 794 0.20% 1
chrUn_KI270466v1 406 32.93% 1
chrUn_KI270467v1 1256 32.04% 2
chrX 1204349 0.77% 1059
3331 contigs with no values (184407950 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42209 220 20447 1183.52 846
global segment-length histogram

Files

Filename Size md5
ENCFF856JVD.bed.gz 1.12 MB d7f6a27737f98d5d6f6c184d7bbf2838
ENCFF856JVD.tabix.bed.gz 482.3 KB 522e05b66098c311695f23814cd3ee3e
ENCFF856JVD.tabix.bed.gz.tbi 189.76 KB b66a1cb03472eb64f2d0dddaee0090e8
genomic_resource.yaml 1.36 KB 6ebdcc26233023d7bbc1d05274eba04e
statistics/