Resource

Id Histone_ChIP-seq/ENCSR115TSAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR115TSA [biosample_summary="Homo sapiens spleen tissue female adult (30 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR115TSA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:13.203606+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR115TSA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR115TSA float

Histone_ChIP-seq_ENCSR115TSA
Histone_ChIP-seq ENCSR115TSA [biosample_summary="Homo sapiens spleen tissue female adult (30 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR115TSA [1.89, 17.7]
n
62,800,114
mean
5.26
sd
1.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 628001141.95% 136385
chr1 6393839 2.57% 13486
chr2 5403876 2.23% 11834
chr3 4760014 2.40% 10418
chr4 2662397 1.40% 6237
chr5 3435226 1.89% 7620
chr6 3813737 2.23% 8243
chr7 2824755 1.77% 6471
chr8 2735149 1.88% 6095
chr9 2572250 1.86% 5663
chr10 3208094 2.40% 7022
chr11 3406177 2.52% 7004
chr12 3357387 2.52% 7319
chr13 1658840 1.45% 3726
chr14 2319001 2.17% 4960
chr15 2385400 2.34% 5067
chr16 1823515 2.02% 3819
chr17 2842946 3.41% 5915
chr17_GL000205v2_random 967 0.52% 3
chr18 1326143 1.65% 2920
chr19 1613986 2.75% 3424
chr20 1771364 2.75% 3632
chr21 710749 1.52% 1558
chr22 1165669 2.29% 2419
chrUn_GL000219v1 557 0.31% 2
chrX 608076 0.39% 1528
3341 contigs with no values (185939711 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136385 155 5661 460.46 361
global segment-length histogram

Files

Filename Size md5
ENCFF740ZXV.bed.gz 2.68 MB bd0ee78bc5952da24544d39e76fa43d8
ENCFF740ZXV.tabix.bed.gz 1.33 MB 61fa823fe56251f33f9fa0677c247a43
ENCFF740ZXV.tabix.bed.gz.tbi 343.12 KB b1138401be4fe6943fe9a752ccda535c
genomic_resource.yaml 1.97 KB e07e2441292b1a3e6c20e0005968a61a
statistics/