Resource

Id Histone_ChIP-seq/ENCSR113AFYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR113AFY [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR113AFY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:11.674897+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR113AFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: Several of the old analyses and files on this dataset have been revoked due to processing with a contaminated control. The new analyses and files submitted in Feb 2023 are the corrected version.
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR113AFY float

Histone_ChIP-seq_ENCSR113AFY
Histone_ChIP-seq ENCSR113AFY [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR113AFY [1.77, 14.4]
n
32,993,680
mean
5.06
sd
1.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 329936801.03% 101187
chr1 3003196 1.21% 9112
chr2 2911175 1.20% 8986
chr3 2365957 1.19% 7452
chr4 1358726 0.71% 4499
chr5 1718852 0.95% 5464
chr6 1575317 0.92% 5343
chr7 1621072 1.02% 5165
chr8 1497518 1.03% 4778
chr9 1761691 1.27% 5148
chr10 2117825 1.58% 6225
chr11 1822509 1.35% 5269
chr12 1339931 1.01% 4336
chr13 688375 0.60% 2341
chr14 1040226 0.97% 3109
chr15 1171302 1.15% 3535
chr16 1233438 1.37% 3544
chr17 1430368 1.72% 3980
chr18 758546 0.94% 2456
chr19 1071867 1.83% 2881
chr20 960163 1.49% 2840
chr21 328181 0.70% 1032
chr22 851282 1.68% 2344
chrX 366163 0.23% 1348
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101187 110 5609 326.07 266
global segment-length histogram

Files

Filename Size md5
ENCFF458XZT.bed.gz 2.04 MB adcacf364d215c987040e56f18519400
ENCFF458XZT.tabix.bed.gz 996.69 KB fa0581c3ff33d47de4321e4adba8157d
ENCFF458XZT.tabix.bed.gz.tbi 305.79 KB 34856913c4d084551c7407908d63b161
genomic_resource.yaml 1.9 KB 3f00015dcfbba5a11291a311b1367189
statistics/