Resource

Id Histone_ChIP-seq/ENCSR111QAWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR111QAW [biosample_summary="Homo sapiens SK-N-MC" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR111QAW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002860/
  • biosample_summary: Homo sapiens SK-N-MC
  • date_created: 2015-02-20T02:37:23.469072+00:00
  • date_released: 2017-01-10
  • doi: 10.17989/ENCSR111QAW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR111QAW float

Histone_ChIP-seq_ENCSR111QAW
Histone_ChIP-seq ENCSR111QAW [biosample_summary="Homo sapiens SK-N-MC" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR111QAW [1.6, 62.4]
n
41,889,218
mean
10.8
sd
8.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 418892181.30% 48147
chr1 4133211 1.66% 4663
chr2 3229202 1.33% 3768
chr3 2539058 1.28% 2907
chr4 2031049 1.07% 2450
chr5 2124645 1.17% 2445
chr6 2935285 1.72% 3368
chr7 2200615 1.38% 2594
chr8 2557193 1.76% 2806
chr9 1773487 1.28% 2067
chr10 1045900 0.78% 1222
chr11 2124278 1.57% 2371
chr12 2318467 1.74% 2679
chr13 1180140 1.03% 1405
chr14 1618146 1.51% 1809
chr15 1223777 1.20% 1421
chr16 1079594 1.20% 1233
chr17 2041089 2.45% 2319
chr18 632265 0.79% 757
chr19 1810349 3.09% 2057
chr20 1102019 1.71% 1286
chr21 466566 1.00% 519
chr22 777339 1.53% 877
chrX 945544 0.61% 1124
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48147 200 14572 870.03 601
global segment-length histogram

Files

Filename Size md5
ENCFF728VTR.bed.gz 1.13 MB b2828a7c4366eaccae67aff8e4c094ce
ENCFF728VTR.tabix.bed.gz 521.26 KB bf000ef6f15de0bf7a31609c4738959d
ENCFF728VTR.tabix.bed.gz.tbi 209.9 KB de49450f8be276545eebc481dca21fb8
genomic_resource.yaml 1.37 KB ec24ea4bf39262986144c32d7623974d
statistics/