Resource
| Id | Histone_ChIP-seq/ENCSR110UIN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR110UIN [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (25 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN735AXX|/analyses/ENCAN735AXX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF576DRU|/files/ENCFF576DRU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 30182569 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR110UIN | float |
Histone_ChIP-seq_ENCSR110UIN |
Histone_ChIP-seq ENCSR110UIN [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K27me3"]
|
 |
[1.56, 17.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42475113 | 1.32% | 74148 |
| chr1 | 4563733 | 1.83% | 7619 |
| chr2 | 2387766 | 0.99% | 4171 |
| chr3 | 1197441 | 0.60% | 2128 |
| chr4 | 1252552 | 0.66% | 2004 |
| chr5 | 1713939 | 0.94% | 2871 |
| chr6 | 1606907 | 0.94% | 2807 |
| chr7 | 1682984 | 1.06% | 2869 |
| chr8 | 1637964 | 1.13% | 2797 |
| chr9 | 1669834 | 1.21% | 2608 |
| chr10 | 2035097 | 1.52% | 3470 |
| chr11 | 2144759 | 1.59% | 3672 |
| chr12 | 1821965 | 1.37% | 3187 |
| chr13 | 853785 | 0.75% | 1490 |
| chr14 | 1215225 | 1.14% | 2131 |
| chr15 | 1096810 | 1.08% | 1982 |
| chr16 | 1714505 | 1.90% | 2986 |
| chr17 | 2589052 | 3.11% | 4216 |
| chr18 | 545019 | 0.68% | 1024 |
| chr19 | 2110763 | 3.60% | 3509 |
| chr20 | 2372433 | 3.68% | 3956 |
| chr21 | 599466 | 1.28% | 1045 |
| chr22 | 1749681 | 3.44% | 2964 |
| chrX | 3912834 | 2.51% | 8640 |
| chrY | 599 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 74148 | 165 | 8158 | 572.84 | 441 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF882MGC.bed.gz | 1.47 MB | f30d016497701a04ff40e2da7086059d |
| ENCFF882MGC.tabix.bed.gz | 735.3 KB | 460bc9b6aaa86b78b3e328a3c637c58b |
| ENCFF882MGC.tabix.bed.gz.tbi | 194.03 KB | 1096557974fcacf7a8c33529f58252bd |
| genomic_resource.yaml | 2.17 KB | f48c5fa1e247b3216ae048f821d5b644 |
| statistics/ |