Resource

Id Histone_ChIP-seq/ENCSR109NBJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR109NBJ [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR109NBJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:06.001679+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR109NBJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR109NBJ float

Histone_ChIP-seq_ENCSR109NBJ
Histone_ChIP-seq ENCSR109NBJ [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR109NBJ [1.98, 15.6]
n
14,886,594
mean
5.16
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 148865940.46% 24272
chr1 914350 0.37% 1570
chr1_KI270708v1_random 608 0.48% 1
chr1_KI270709v1_random 987 1.48% 1
chr2 1002358 0.41% 1781
chr3 760447 0.38% 1348
chr4 890520 0.47% 1550
chr4_GL000008v2_random 4442 2.12% 1
chr5 1089976 0.60% 1760
chr5_GL000208v1_random 479 0.52% 1
chr6 653391 0.38% 1174
chr7 938685 0.59% 1544
chr8 825033 0.57% 1395
chr9 537894 0.39% 922
chr9_KI270720v1_random 275 0.70% 1
chr10 805572 0.60% 1327
chr11 678671 0.50% 1169
chr12 780891 0.59% 1241
chr13 358599 0.31% 672
chr14 376805 0.35% 648
chr14_GL000194v1_random 252 0.13% 1
chr14_GL000225v1_random 22470 10.64% 38
chr14_KI270722v1_random 8497 4.38% 12
chr15 383094 0.38% 609
chr16 522284 0.58% 844
chr17 296938 0.36% 505
chr17_GL000205v2_random 4516 2.43% 8
chr17_KI270729v1_random 24971 8.89% 25
chr17_KI270730v1_random 11488 10.21% 17
chr18 296989 0.37% 536
chr19 1444718 2.46% 1806
chr20 329714 0.51% 555
chr21 284275 0.61% 401
chr22 148004 0.29% 235
chr22_KI270732v1_random 597 1.44% 1
chr22_KI270735v1_random 2120 4.95% 3
chr22_KI270736v1_random 104409 57.39% 65
chr22_KI270738v1_random 3935 3.96% 5
chrUn_GL000216v2 43882 24.85% 36
chrUn_GL000219v1 442 0.25% 1
chrUn_GL000224v1 5755 3.20% 8
chrUn_KI270435v1 1825 1.96% 2
chrUn_KI270438v1 15466 13.75% 20
chrUn_KI270442v1 59241 15.11% 53
chrUn_KI270508v1 403 20.66% 1
chrUn_KI270510v1 285 11.80% 1
chrUn_KI270512v1 1575 6.94% 1
chrUn_KI270517v1 1217 37.41% 2
chrUn_KI270519v1 2385 1.73% 3
chrUn_KI270522v1 480 8.46% 1
chrUn_KI270538v1 1494 1.64% 3
chrUn_KI270589v1 3024 6.80% 1
chrUn_KI270590v1 311 6.64% 1
chrUn_KI270591v1 970 16.74% 1
chrUn_KI270744v1 1601 0.95% 2
chrUn_KI270750v1 557 0.37% 1
chrUn_KI270751v1 1581 1.05% 2
chrUn_KI270756v1 1845 2.32% 2
chrUn_KI270757v1 3056 4.29% 4
chrX 113330 0.07% 214
chrY 116615 0.20% 140
3306 contigs with no values (124927448 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24272 225 22625 613.32 514.5
global segment-length histogram

Files

Filename Size md5
ENCFF391GCQ.bed.gz 455.61 KB e0abc85b41b9c0bdb9557ba77bbaf2f2
ENCFF391GCQ.tabix.bed.gz 240.65 KB 6d927e1d0e4696bfde5427788105a225
ENCFF391GCQ.tabix.bed.gz.tbi 145.78 KB bea48751b25e7403301a62d1a881b986
genomic_resource.yaml 2.01 KB 4046baa7e2e3515fd077900fae6f5a06
statistics/