Resource
| Id | Histone_ChIP-seq/ENCSR105YNJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR105YNJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN451ZYV|/analyses/ENCAN451ZYV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF279BHM|/files/ENCFF279BHM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21637077 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF892LXE|/files/ENCFF892LXE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 34522093 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR105YNJ | float |
Histone_ChIP-seq_ENCSR105YNJ |
Histone_ChIP-seq ENCSR105YNJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K36me3"]
|
 |
[1.32, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 140994573 | 4.38% | 86319 |
| chr1 | 14526095 | 5.83% | 8354 |
| chr2 | 11941046 | 4.93% | 7308 |
| chr3 | 9054618 | 4.57% | 5681 |
| chr4 | 5727583 | 3.01% | 3925 |
| chr5 | 7267364 | 4.00% | 4405 |
| chr6 | 6825391 | 4.00% | 4439 |
| chr7 | 6302755 | 3.96% | 4216 |
| chr8 | 4856467 | 3.35% | 3200 |
| chr9 | 5899658 | 4.26% | 3666 |
| chr10 | 6529745 | 4.88% | 3911 |
| chr11 | 6721079 | 4.98% | 3836 |
| chr12 | 8148006 | 6.11% | 4514 |
| chr13 | 3112213 | 2.72% | 2318 |
| chr14 | 5092256 | 4.76% | 3067 |
| chr15 | 5357755 | 5.25% | 3286 |
| chr16 | 5477115 | 6.06% | 3115 |
| chr17 | 7624227 | 9.16% | 4149 |
| chr18 | 2474849 | 3.08% | 1667 |
| chr19 | 7443346 | 12.70% | 4074 |
| chr20 | 3774036 | 5.86% | 2260 |
| chr21 | 1553723 | 3.33% | 929 |
| chr22 | 3139448 | 6.18% | 1861 |
| chrX | 2031766 | 1.30% | 2007 |
| chrY | 114032 | 0.20% | 131 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86319 | 210 | 106632 | 1633.41 | 908 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF951RZL.bed.gz | 1.95 MB | 11306435737e98b5450a9ecd08dc6330 |
| ENCFF951RZL.tabix.bed.gz | 911.5 KB | 9d1b023387304ca5108ef27d7d9c2c85 |
| ENCFF951RZL.tabix.bed.gz.tbi | 143.7 KB | d1dbed748a0c9ff2866377785b94e96c |
| genomic_resource.yaml | 2.5 KB | eae975ba234230051384f6743669b145 |
| statistics/ |