Resource

Id Histone_ChIP-seq/ENCSR103HMPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR103HMP [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR103HMP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:17.981997+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR103HMP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (15 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR103HMP float

Histone_ChIP-seq_ENCSR103HMP
Histone_ChIP-seq ENCSR103HMP [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR103HMP [1.46, 91.6]
n
30,205,920
mean
27.8
sd
15.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 302059200.94% 22813
chr1 2917264 1.17% 2163
chr1_KI270709v1_random 524 0.78% 1
chr1_KI270712v1_random 3228 1.83% 5
chr1_KI270713v1_random 269 0.66% 1
chr2 2166378 0.89% 1569
chr3 1773517 0.89% 1266
chr3_GL000221v1_random 334 0.21% 1
chr4 1331609 0.70% 945
chr5 1544327 0.85% 1080
chr6 1761966 1.03% 1290
chr7 1503207 0.94% 1139
chr8 1187892 0.82% 858
chr9 1229544 0.89% 953
chr9_KI270717v1_random 448 1.12% 1
chr9_KI270719v1_random 1280 0.72% 2
chr10 1260097 0.94% 928
chr11 1570993 1.16% 1161
chr12 1555438 1.17% 1126
chr13 677518 0.59% 487
chr14 1014323 0.95% 745
chr14_KI270725v1_random 340 0.20% 1
chr15 980868 0.96% 759
chr16 1114851 1.23% 885
chr17 1615044 1.94% 1253
chr17_GL000205v2_random 2064 1.11% 2
chr17_KI270729v1_random 2439 0.87% 3
chr18 567078 0.71% 415
chr19 1811373 3.09% 1543
chr20 737010 1.14% 586
chr21 277804 0.59% 231
chr22 565342 1.11% 489
chr22_KI270733v1_random 1057 0.59% 3
chrUn_GL000195v1 1893 1.04% 5
chrUn_GL000216v2 1565 0.89% 3
chrUn_GL000218v1 342 0.21% 1
chrUn_GL000219v1 3370 1.88% 3
chrUn_GL000220v1 903 0.56% 3
chrUn_GL000224v1 297 0.17% 1
chrUn_KI270429v1 436 32.04% 1
chrUn_KI270435v1 2561 2.75% 3
chrUn_KI270438v1 5623 5.00% 9
chrUn_KI270442v1 7409 1.89% 13
chrUn_KI270466v1 903 73.24% 1
chrUn_KI270467v1 1675 42.73% 1
chrUn_KI270507v1 474 8.85% 1
chrUn_KI270509v1 408 17.60% 1
chrUn_KI270515v1 658 10.34% 1
chrUn_KI270517v1 1332 40.95% 1
chrUn_KI270519v1 451 0.33% 1
chrUn_KI270584v1 710 15.73% 1
chrUn_KI270587v1 1620 54.56% 1
chrUn_KI270589v1 284 0.64% 1
chrUn_KI270590v1 1545 32.98% 1
chrUn_KI270746v1 438 0.66% 1
chrUn_KI270750v1 1207 0.81% 3
chrUn_KI270751v1 1737 1.15% 4
chrUn_KI270757v1 3921 5.50% 7
chrX 988732 0.63% 854
3308 contigs with no values (182534748 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22813 195 24790 1324.07 1142
global segment-length histogram

Files

Filename Size md5
ENCFF161KTL.bed.gz 644.27 KB 35c7a34667c284d762637f5dbbece5ca
ENCFF161KTL.tabix.bed.gz 269.3 KB 886003d84b3b096b9e31456a0d8ffe03
ENCFF161KTL.tabix.bed.gz.tbi 149.43 KB 4f31f628b5323d50178ce460b9cfa766
genomic_resource.yaml 2.06 KB 2a11ddc32e4ddcf1bc80b3d2bdd551fd
statistics/