Resource
| Id | Histone_ChIP-seq/ENCSR100QDR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR100QDR [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN746CUV|/analyses/ENCAN746CUV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF630DDE|/files/ENCFF630DDE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 35690867 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR100QDR | float |
Histone_ChIP-seq_ENCSR100QDR |
Histone_ChIP-seq ENCSR100QDR [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"]
|
 |
[1.5, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 104862881 | 3.26% | 130999 |
| chr1 | 10445107 | 4.20% | 12410 |
| chr2 | 8564541 | 3.54% | 10872 |
| chr3 | 7052019 | 3.56% | 8859 |
| chr4 | 4565034 | 2.40% | 6099 |
| chr5 | 6011087 | 3.31% | 7451 |
| chr6 | 5963320 | 3.49% | 7671 |
| chr7 | 5194193 | 3.26% | 6737 |
| chr8 | 4939306 | 3.40% | 6442 |
| chr9 | 4782799 | 3.46% | 5878 |
| chr10 | 5124136 | 3.83% | 6292 |
| chr11 | 6364228 | 4.71% | 7561 |
| chr12 | 4700297 | 3.53% | 5954 |
| chr13 | 2713887 | 2.37% | 3601 |
| chr14 | 3672811 | 3.43% | 4531 |
| chr15 | 3591674 | 3.52% | 4271 |
| chr16 | 3363257 | 3.72% | 4056 |
| chr17 | 5200116 | 6.25% | 5827 |
| chr18 | 2399781 | 2.99% | 3147 |
| chr19 | 3110648 | 5.31% | 3872 |
| chr20 | 2836062 | 4.40% | 3455 |
| chr21 | 983396 | 2.11% | 1292 |
| chr22 | 2182025 | 4.29% | 2591 |
| chrX | 1103157 | 0.71% | 2130 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 130999 | 195 | 22981 | 800.49 | 595 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF532JIH.bed.gz | 2.4 MB | feb971fa4b1f3d36f14b743dd17f9de0 |
| ENCFF532JIH.tabix.bed.gz | 1.25 MB | 9ebaa8af4c69b20767f758c14078be24 |
| ENCFF532JIH.tabix.bed.gz.tbi | 382.94 KB | f82e18ee2de5afa310356ad4597cbd3a |
| genomic_resource.yaml | 2.05 KB | 7ec25ff68314fb4a99518adfdc872747 |
| statistics/ |