Resource
| Id | Histone_ChIP-seq/ENCSR098YIU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR098YIU [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN249KRI|/analyses/ENCAN249KRI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN249KRI|/analyses/ENCAN249KRI/} has in progress subobject document {1932000b-149b-4178-8713-2f9926455045|/documents/1932000b-149b-4178-8713-2f9926455045/} audit_not_compliant: Processed alignments file {ENCFF284CTA|/files/ENCFF284CTA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26250319 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR098YIU | float |
Histone_ChIP-seq_ENCSR098YIU |
Histone_ChIP-seq ENCSR098YIU [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K4me1"]
|
 |
[1.81, 30.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 86385461 | 2.68% | 129158 |
| chr1 | 8459771 | 3.40% | 12151 |
| chr2 | 6995357 | 2.89% | 10588 |
| chr3 | 4808355 | 2.42% | 7494 |
| chr4 | 2764850 | 1.45% | 4779 |
| chr5 | 4323453 | 2.38% | 6763 |
| chr6 | 4170504 | 2.44% | 6833 |
| chr7 | 3866298 | 2.43% | 6065 |
| chr8 | 3463799 | 2.39% | 5511 |
| chr9 | 4484410 | 3.24% | 6191 |
| chr10 | 5136041 | 3.84% | 7678 |
| chr11 | 5288903 | 3.92% | 7316 |
| chr12 | 3829458 | 2.87% | 5818 |
| chr13 | 1642778 | 1.44% | 2863 |
| chr14 | 2965263 | 2.77% | 4204 |
| chr15 | 3226416 | 3.16% | 4842 |
| chr16 | 3695760 | 4.09% | 5049 |
| chr17 | 5003743 | 6.01% | 6564 |
| chr18 | 1658638 | 2.06% | 2682 |
| chr19 | 3331980 | 5.68% | 4755 |
| chr20 | 2890710 | 4.49% | 4163 |
| chr21 | 930921 | 1.99% | 1486 |
| chr22 | 2401758 | 4.73% | 3284 |
| chrX | 1046295 | 0.67% | 2079 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 129158 | 150 | 12555 | 668.84 | 491 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF920BHH.bed.gz | 2.47 MB | fe7eaebde93565392218683b3a40c52b |
| ENCFF920BHH.tabix.bed.gz | 1.22 MB | ab35735ea9b16502c0ef757238fb0dba |
| ENCFF920BHH.tabix.bed.gz.tbi | 346.2 KB | fcab5dbfe708745eab255f569a61a677 |
| genomic_resource.yaml | 2.2 KB | 01c43d0b378b313a9cafe0e75a53fcc5 |
| statistics/ |