Resource

Id Histone_ChIP-seq/ENCSR097PJQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR097PJQ [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR097PJQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue male embryo (16 weeks)
  • date_created: 2017-03-22T16:16:51.109241+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR097PJQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR097PJQ float

Histone_ChIP-seq_ENCSR097PJQ
Histone_ChIP-seq ENCSR097PJQ [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR097PJQ [1.95, 104]
n
23,054,510
mean
14.7
sd
6.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 230545100.72% 23440
chr1 2242556 0.90% 2289
chr2 1587952 0.66% 1602
chr3 1286441 0.65% 1275
chr4 949921 0.50% 950
chr5 1120315 0.62% 1163
chr6 1353070 0.79% 1358
chr7 1175081 0.74% 1238
chr8 840204 0.58% 867
chr9 948637 0.69% 954
chr10 938038 0.70% 927
chr11 1259195 0.93% 1244
chr12 1167501 0.88% 1150
chr13 443918 0.39% 460
chr14 754874 0.71% 758
chr15 762055 0.75% 752
chr16 936557 1.04% 920
chr17 1350465 1.62% 1327
chr18 379649 0.47% 389
chr19 1560386 2.66% 1643
chr20 582848 0.90% 587
chr21 235594 0.50% 246
chr22 498820 0.98% 500
chrM 11276 68.05% 11
chrX 642719 0.41% 791
chrY 26438 0.05% 39
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23440 185 6986 983.55 843
global segment-length histogram

Files

Filename Size md5
ENCFF491KBG.bed.gz 564.85 KB ee65be29c1dbceb342a74de653e4980c
ENCFF491KBG.tabix.bed.gz 259.61 KB 671bd14e3e469054df12e698c65095c2
ENCFF491KBG.tabix.bed.gz.tbi 147.22 KB fa2674ea5a0f594a1b1e77478ddbf425
genomic_resource.yaml 2.0 KB b49f88aa41f8a087b72bc7284c5ce4a6
statistics/