Resource
| Id | Histone_ChIP-seq/ENCSR095YMD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR095YMD [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN929QFG|/analyses/ENCAN929QFG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065VYW|/files/ENCFF065VYW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065VYW|/files/ENCFF065VYW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.38. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR095YMD | float |
Histone_ChIP-seq_ENCSR095YMD |
Histone_ChIP-seq ENCSR095YMD [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K27ac"]
|
 |
[1.63, 96.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 111207931 | 3.46% | 69090 |
| chr1 | 11375257 | 4.57% | 6748 |
| chr1_KI270713v1_random | 1461 | 3.59% | 3 |
| chr2 | 8446109 | 3.49% | 5394 |
| chr3 | 7485608 | 3.77% | 4702 |
| chr4 | 4548788 | 2.39% | 2965 |
| chr5 | 5144678 | 2.83% | 3343 |
| chr6 | 5504598 | 3.22% | 3578 |
| chr7 | 5097045 | 3.20% | 3275 |
| chr8 | 4202726 | 2.90% | 2814 |
| chr9 | 5316228 | 3.84% | 3134 |
| chr10 | 6311238 | 4.72% | 3817 |
| chr11 | 5923096 | 4.38% | 3426 |
| chr12 | 5839581 | 4.38% | 3570 |
| chr13 | 2450047 | 2.14% | 1631 |
| chr14 | 3810651 | 3.56% | 2287 |
| chr15 | 3913288 | 3.84% | 2546 |
| chr16 | 3923242 | 4.34% | 2378 |
| chr17 | 6123342 | 7.35% | 3628 |
| chr17_GL000205v2_random | 430 | 0.23% | 1 |
| chr18 | 1844616 | 2.30% | 1300 |
| chr19 | 4620246 | 7.88% | 2636 |
| chr20 | 3207483 | 4.98% | 1902 |
| chr21 | 1160500 | 2.48% | 808 |
| chr22 | 2763949 | 5.44% | 1563 |
| chrUn_GL000195v1 | 4796 | 2.62% | 4 |
| chrUn_GL000219v1 | 1882 | 1.05% | 2 |
| chrUn_GL000220v1 | 247 | 0.15% | 1 |
| chrUn_KI270438v1 | 360 | 0.32% | 1 |
| chrX | 2186439 | 1.40% | 1633 |
| 3337 contigs with no values (185441763 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 69090 | 210 | 115959 | 1609.61 | 990 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF484GTZ.bed.gz | 1.64 MB | 7a9891876aa8dd158ab4df84043d7e53 |
| ENCFF484GTZ.tabix.bed.gz | 752.8 KB | 61af81783b684bf33eaeff94e19d4676 |
| ENCFF484GTZ.tabix.bed.gz.tbi | 224.6 KB | 13b215ab140b05ba17c53f29dace8a4d |
| genomic_resource.yaml | 2.81 KB | c613bade4b633e563776662e5eb75c07 |
| statistics/ |