Resource
| Id | Histone_ChIP-seq/ENCSR089NBT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR089NBT [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN315CDC|/analyses/ENCAN315CDC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF711MSU|/files/ENCFF711MSU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 24468699 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR089NBT | float |
Histone_ChIP-seq_ENCSR089NBT |
Histone_ChIP-seq ENCSR089NBT [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K4me1"]
|
 |
[1.87, 25.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 116377330 | 3.62% | 190666 |
| chr1 | 12410869 | 4.99% | 18936 |
| chr2 | 9397143 | 3.88% | 15692 |
| chr3 | 7818616 | 3.94% | 13405 |
| chr4 | 4088160 | 2.15% | 7941 |
| chr5 | 6046580 | 3.33% | 10419 |
| chr6 | 5759622 | 3.37% | 10614 |
| chr7 | 5132446 | 3.22% | 9056 |
| chr8 | 4995538 | 3.44% | 8520 |
| chr9 | 5105607 | 3.69% | 8135 |
| chr10 | 5907598 | 4.42% | 9613 |
| chr11 | 7113671 | 5.27% | 10681 |
| chr12 | 5556289 | 4.17% | 9492 |
| chr13 | 2139600 | 1.87% | 4078 |
| chr14 | 3793262 | 3.54% | 6031 |
| chr15 | 4005137 | 3.93% | 6410 |
| chr16 | 4362779 | 4.83% | 6681 |
| chr17 | 6046653 | 7.26% | 8468 |
| chr18 | 2528482 | 3.15% | 4352 |
| chr19 | 4268552 | 7.28% | 6347 |
| chr20 | 3789467 | 5.88% | 5946 |
| chr21 | 1691657 | 3.62% | 2662 |
| chr22 | 3262581 | 6.42% | 4384 |
| chrX | 1157021 | 0.74% | 2803 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 190666 | 135 | 16690 | 610.37 | 433 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF513VGQ.bed.gz | 3.52 MB | 3941c534343e6075eda102547cafd0a1 |
| ENCFF513VGQ.tabix.bed.gz | 1.77 MB | 5ccd9571c2b6af4fbb203537007d2109 |
| ENCFF513VGQ.tabix.bed.gz.tbi | 383.97 KB | ee9a05d02bd2c9d6e53012eefcd42782 |
| genomic_resource.yaml | 2.06 KB | 0af96c56a39918676d47a9e4392bd79b |
| statistics/ |