Resource
| Id | Histone_ChIP-seq/ENCSR085KRD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR085KRD [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN307NJG|/analyses/ENCAN307NJG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF786HYF|/files/ENCFF786HYF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26185811 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR085KRD | float |
Histone_ChIP-seq_ENCSR085KRD |
Histone_ChIP-seq ENCSR085KRD [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K9me3"]
|
 |
[1.96, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12195730 | 0.38% | 23191 |
| chr1 | 775135 | 0.31% | 1522 |
| chr1_KI270709v1_random | 1849 | 2.77% | 3 |
| chr2 | 941532 | 0.39% | 1881 |
| chr3 | 673638 | 0.34% | 1418 |
| chr4 | 683280 | 0.36% | 1404 |
| chr4_GL000008v2_random | 4282 | 2.04% | 3 |
| chr5 | 900352 | 0.50% | 1693 |
| chr6 | 596377 | 0.35% | 1225 |
| chr7 | 685842 | 0.43% | 1390 |
| chr8 | 601013 | 0.41% | 1222 |
| chr9 | 464764 | 0.34% | 884 |
| chr10 | 677566 | 0.51% | 1309 |
| chr11 | 529133 | 0.39% | 1082 |
| chr12 | 672662 | 0.50% | 1237 |
| chr13 | 326843 | 0.29% | 693 |
| chr14 | 331797 | 0.31% | 670 |
| chr14_GL000225v1_random | 2047 | 0.97% | 5 |
| chr14_KI270722v1_random | 3833 | 1.98% | 8 |
| chr15 | 330444 | 0.32% | 608 |
| chr16 | 413822 | 0.46% | 756 |
| chr17 | 245315 | 0.29% | 472 |
| chr17_GL000205v2_random | 4524 | 2.44% | 7 |
| chr17_KI270729v1_random | 14576 | 5.19% | 23 |
| chr17_KI270730v1_random | 5451 | 4.84% | 8 |
| chr18 | 260917 | 0.32% | 519 |
| chr19 | 1251045 | 2.13% | 1692 |
| chr20 | 262662 | 0.41% | 517 |
| chr21 | 234483 | 0.50% | 361 |
| chr22 | 115213 | 0.23% | 227 |
| chr22_KI270735v1_random | 552 | 1.29% | 1 |
| chr22_KI270736v1_random | 13894 | 7.64% | 21 |
| chr22_KI270738v1_random | 441 | 0.44% | 1 |
| chrUn_GL000216v2 | 19472 | 11.03% | 29 |
| chrUn_GL000219v1 | 583 | 0.33% | 1 |
| chrUn_GL000224v1 | 2253 | 1.25% | 4 |
| chrUn_KI270435v1 | 647 | 0.70% | 1 |
| chrUn_KI270438v1 | 5263 | 4.68% | 8 |
| chrUn_KI270442v1 | 35956 | 9.17% | 47 |
| chrUn_KI270517v1 | 285 | 8.76% | 1 |
| chrUn_KI270519v1 | 373 | 0.27% | 1 |
| chrUn_KI270589v1 | 2348 | 5.28% | 3 |
| chrUn_KI270591v1 | 700 | 12.08% | 1 |
| chrUn_KI270746v1 | 881 | 1.33% | 2 |
| chrUn_KI270751v1 | 1424 | 0.94% | 3 |
| chrUn_KI270756v1 | 318 | 0.40% | 1 |
| chrUn_KI270757v1 | 1327 | 1.86% | 2 |
| chrX | 76503 | 0.05% | 188 |
| chrY | 22113 | 0.04% | 37 |
| 3318 contigs with no values (125799440 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 23191 | 225 | 14580 | 525.88 | 440 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF507CWJ.bed.gz | 431.74 KB | 18021dbfd11e39682a65f12ca5711417 |
| ENCFF507CWJ.tabix.bed.gz | 228.67 KB | f5c2c84781e1cab752f5183df66b6665 |
| ENCFF507CWJ.tabix.bed.gz.tbi | 147.73 KB | ed261205c44c8258a3690a86d1a65cf3 |
| genomic_resource.yaml | 2.02 KB | 8aac4ddf8a4526feefe8da90b79e456e |
| statistics/ |