Resource
| Id | Histone_ChIP-seq/ENCSR083ZUY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR083ZUY [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN749PHD|/analyses/ENCAN749PHD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF704CPM|/files/ENCFF704CPM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 31693175 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR083ZUY | float |
Histone_ChIP-seq_ENCSR083ZUY |
Histone_ChIP-seq ENCSR083ZUY [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K36me3"]
|
 |
[1.82, 17] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61850933 | 1.92% | 95199 |
| chr1 | 6300999 | 2.53% | 9399 |
| chr2 | 4779446 | 1.97% | 7584 |
| chr3 | 3941354 | 1.99% | 6303 |
| chr4 | 2428205 | 1.28% | 4172 |
| chr5 | 2991729 | 1.65% | 4864 |
| chr6 | 2925189 | 1.71% | 4816 |
| chr7 | 2583042 | 1.62% | 4162 |
| chr8 | 1997453 | 1.38% | 3321 |
| chr9 | 3035124 | 2.19% | 4465 |
| chr10 | 2875712 | 2.15% | 4591 |
| chr11 | 3398598 | 2.52% | 4947 |
| chr12 | 3557408 | 2.67% | 5351 |
| chr13 | 1289857 | 1.13% | 2154 |
| chr14 | 2076049 | 1.94% | 3172 |
| chr15 | 2366891 | 2.32% | 3723 |
| chr16 | 2705293 | 2.99% | 3886 |
| chr17 | 3331725 | 4.00% | 4830 |
| chr18 | 956709 | 1.19% | 1695 |
| chr19 | 3331759 | 5.68% | 4451 |
| chr20 | 1923615 | 2.98% | 2807 |
| chr21 | 758585 | 1.62% | 1153 |
| chr22 | 1563462 | 3.08% | 2161 |
| chrX | 701564 | 0.45% | 1140 |
| chrY | 31165 | 0.05% | 52 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95199 | 220 | 16325 | 649.7 | 504 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF948EIO.bed.gz | 1.86 MB | c85a4b82c01cd8594576333a6b1486b3 |
| ENCFF948EIO.tabix.bed.gz | 952.33 KB | 98442d9e4c8383ddc876fd2fa82c6949 |
| ENCFF948EIO.tabix.bed.gz.tbi | 170.17 KB | c5b1e72ff03907a8a74302770f5d81aa |
| genomic_resource.yaml | 2.02 KB | a871eace316d795c1070c9c9d99ba682 |
| statistics/ |