Resource

Id Histone_ChIP-seq/ENCSR083FDDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR083FDD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR083FDD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:47.532775+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR083FDD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR083FDD float

Histone_ChIP-seq_ENCSR083FDD
Histone_ChIP-seq ENCSR083FDD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR083FDD [1.51, 13.6]
n
80,169,108
mean
4.43
sd
1.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 801691082.49% 70809
chr1 2761041 1.11% 2482
chr2 2706855 1.12% 2358
chr3 1081292 0.55% 1006
chr4 1424873 0.75% 1192
chr5 1928721 1.06% 1571
chr6 2523098 1.48% 1857
chr7 1878111 1.18% 1478
chr8 1568791 1.08% 1461
chr9 1170034 0.85% 955
chr10 2250656 1.68% 2008
chr11 1435657 1.06% 1329
chr12 1810766 1.36% 1459
chr13 827160 0.72% 719
chr14 1828957 1.71% 1447
chr15 1476362 1.45% 1371
chr16 1692165 1.87% 1564
chr17 2125729 2.55% 1606
chr18 776199 0.97% 741
chr19 1676142 2.86% 1406
chr20 1441242 2.24% 1365
chr21 648578 1.39% 633
chr22 642317 1.26% 658
chrX 44493095 28.51% 40140
chrY 1267 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70809 220 85553 1132.19 797
global segment-length histogram

Files

Filename Size md5
ENCFF620QQE.bed.gz 1.35 MB c980d6cfe143a0e80b9778626fcebd7f
ENCFF620QQE.tabix.bed.gz 698.29 KB 43667ad3a36863bd867ee3d392efdd9e
ENCFF620QQE.tabix.bed.gz.tbi 146.93 KB dce07ca4693afdd7238aee5318dbbfda
genomic_resource.yaml 1.75 KB 4c62f3d6fcde5160faef876ae82cf183
statistics/