Resource

Id Histone_ChIP-seq/ENCSR077HGRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR077HGR [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR077HGR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004648/
  • biosample_summary: Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)
  • date_created: 2017-12-06T21:21:41.379244+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR077HGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR077HGR float

Histone_ChIP-seq_ENCSR077HGR
Histone_ChIP-seq ENCSR077HGR [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR077HGR [1.38, 76.3]
n
54,478,060
mean
33.1
sd
19.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 544780601.69% 30395
chr1 5342615 2.15% 2963
chr1_KI270712v1_random 4913 2.79% 3
chr1_KI270713v1_random 665 1.63% 1
chr1_KI270714v1_random 631 1.51% 1
chr2 3761915 1.55% 2108
chr3 3175440 1.60% 1772
chr4 2303636 1.21% 1283
chr5 2596714 1.43% 1452
chr6 3091095 1.81% 1711
chr7 2698375 1.69% 1507
chr8 2046650 1.41% 1192
chr9 2357802 1.70% 1331
chr9_KI270717v1_random 960 2.40% 1
chr10 2470630 1.85% 1447
chr11 2874137 2.13% 1520
chr12 2896273 2.17% 1567
chr13 1185367 1.04% 707
chr14 1727934 1.61% 946
chr14_GL000194v1_random 866 0.45% 2
chr15 1776571 1.74% 1001
chr16 2043613 2.26% 1146
chr17 3052242 3.67% 1621
chr17_GL000205v2_random 2369 1.28% 2
chr18 942372 1.17% 558
chr19 3291566 5.62% 1872
chr20 1431824 2.22% 794
chr21 535913 1.15% 308
chr22 1237844 2.44% 702
chr22_KI270733v1_random 834 0.46% 2
chrM 9760 58.91% 4
chrUn_GL000195v1 702 0.38% 1
chrUn_GL000218v1 494 0.31% 1
chrUn_GL000219v1 4031 2.25% 3
chrUn_GL000220v1 778 0.48% 1
chrUn_KI270438v1 596 0.53% 1
chrUn_KI270467v1 804 20.51% 1
chrX 1558632 1.00% 839
chrY 50497 0.09% 24
3328 contigs with no values (127403649 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30395 260 26702 1792.34 1424
global segment-length histogram

Files

Filename Size md5
ENCFF129HDT.bed.gz 849.32 KB 2dd176c4909a94e746709ed345205fae
ENCFF129HDT.tabix.bed.gz 356.92 KB 448ffc7ad099b4df06b9c8f0b33c657c
ENCFF129HDT.tabix.bed.gz.tbi 186.6 KB 5f96e593096f19000635b145b0aebd2c
genomic_resource.yaml 2.19 KB d47f78b8d4bbc219e39c4be2150bf5ba
statistics/