Resource
| Id | Histone_ChIP-seq/ENCSR067VEM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR067VEM [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN296UMS|/analyses/ENCAN296UMS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF541BDH|/files/ENCFF541BDH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF541BDH|/files/ENCFF541BDH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR067VEM | float |
Histone_ChIP-seq_ENCSR067VEM |
Histone_ChIP-seq ENCSR067VEM [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K9me3"]
|
 |
[1.56, 18.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 76793064 | 2.39% | 108748 |
| chr1 | 2678187 | 1.08% | 3893 |
| chr2 | 3997753 | 1.65% | 6079 |
| chr3 | 3445536 | 1.74% | 5543 |
| chr4 | 4368845 | 2.30% | 7044 |
| chr5 | 5597044 | 3.08% | 8472 |
| chr6 | 3582545 | 2.10% | 5604 |
| chr7 | 5999806 | 3.77% | 8272 |
| chr8 | 5872521 | 4.05% | 8418 |
| chr9 | 2143413 | 1.55% | 3187 |
| chr10 | 2621443 | 1.96% | 3818 |
| chr11 | 4357697 | 3.23% | 6483 |
| chr12 | 3694715 | 2.77% | 4775 |
| chr13 | 4671375 | 4.08% | 7551 |
| chr14 | 3328069 | 3.11% | 5410 |
| chr15 | 2626234 | 2.57% | 3302 |
| chr16 | 2649052 | 2.93% | 3336 |
| chr17 | 1250748 | 1.50% | 1641 |
| chr18 | 2016544 | 2.51% | 3323 |
| chr19 | 7038100 | 12.01% | 4769 |
| chr20 | 930482 | 1.44% | 1421 |
| chr21 | 2187575 | 4.68% | 3227 |
| chr22 | 848224 | 1.67% | 1303 |
| chrX | 696455 | 0.45% | 1523 |
| chrY | 190701 | 0.33% | 354 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108748 | 135 | 44175 | 706.16 | 501 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF153MLO.bed.gz | 2.02 MB | 15949c4dd8e7ea34bd6bccf7f1acfec7 |
| ENCFF153MLO.tabix.bed.gz | 1.02 MB | dc9b281b1dc2f7d104b5b70055e9ca99 |
| ENCFF153MLO.tabix.bed.gz.tbi | 230.31 KB | b64bfa85925891a97a54263add06fffa |
| genomic_resource.yaml | 2.82 KB | b6bcc012f908b2eb9627f15c6ca95c05 |
| statistics/ |