Resource
| Id | Histone_ChIP-seq/ENCSR067BMB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR067BMB [biosample_summary="Homo sapiens lung tissue female embryo (82 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (82 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN861FPB|/analyses/ENCAN861FPB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF950DYG|/files/ENCFF950DYG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6955154 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR067BMB | float |
Histone_ChIP-seq_ENCSR067BMB |
Histone_ChIP-seq ENCSR067BMB [biosample_summary="Homo sapiens lung tissue female embryo (82 days)" and target="H3K4me1"]
|
 |
[2.05, 22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38432008 | 1.19% | 56674 |
| chr1 | 3922148 | 1.58% | 5605 |
| chr2 | 3307579 | 1.37% | 4829 |
| chr3 | 2426373 | 1.22% | 3630 |
| chr4 | 1446159 | 0.76% | 2303 |
| chr5 | 1917998 | 1.06% | 2919 |
| chr6 | 2089116 | 1.22% | 3173 |
| chr7 | 1675047 | 1.05% | 2560 |
| chr8 | 1570023 | 1.08% | 2421 |
| chr9 | 1920804 | 1.39% | 2831 |
| chr10 | 2119929 | 1.58% | 3083 |
| chr11 | 2299120 | 1.70% | 3284 |
| chr12 | 1605341 | 1.20% | 2431 |
| chr13 | 867970 | 0.76% | 1377 |
| chr14 | 1334671 | 1.25% | 1893 |
| chr15 | 1418782 | 1.39% | 2079 |
| chr16 | 1439957 | 1.59% | 2088 |
| chr17 | 2147923 | 2.58% | 2929 |
| chr18 | 874389 | 1.09% | 1309 |
| chr19 | 1065471 | 1.82% | 1565 |
| chr20 | 1093115 | 1.70% | 1633 |
| chr21 | 683802 | 1.46% | 870 |
| chr22 | 962788 | 1.89% | 1391 |
| chrX | 243503 | 0.16% | 471 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56674 | 265 | 7217 | 678.12 | 572 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF691KGG.bed.gz | 1.05 MB | 9eb64d09a5295f35d1b018b16c136587 |
| ENCFF691KGG.tabix.bed.gz | 557.45 KB | 06ac0e88f3e21ab1d5e2baa1801d5e49 |
| ENCFF691KGG.tabix.bed.gz.tbi | 247.52 KB | 22f855e09c92a0eb76917d8f8cf77b50 |
| genomic_resource.yaml | 1.97 KB | cf4e511b55cb36fb3abaaa82dcfc7f40 |
| statistics/ |