Resource
| Id | Histone_ChIP-seq/ENCSR066VKQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR066VKQ [biosample_summary="Homo sapiens IMR-90" and target="H3K56ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_error: Processed alignments file {ENCFF492AKV|/files/ENCFF492AKV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4607368 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN633CKM|/analyses/ENCAN633CKM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN633CKM|/analyses/ENCAN633CKM/} has in progress subobject document {0c310adf-d961-4e11-9d77-fe398572c336|/documents/0c310adf-d961-4e11-9d77-fe398572c336/} audit_not_compliant: Processed alignments file {ENCFF281BMK|/files/ENCFF281BMK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9738608 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR066VKQ | float |
Histone_ChIP-seq_ENCSR066VKQ |
Histone_ChIP-seq ENCSR066VKQ [biosample_summary="Homo sapiens IMR-90" and target="H3K56ac"]
|
 |
[2.07, 49.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28407018 | 0.88% | 62864 |
| chr1 | 2611410 | 1.05% | 5719 |
| chr2 | 2496127 | 1.03% | 5446 |
| chr3 | 1819965 | 0.92% | 4054 |
| chr4 | 1234066 | 0.65% | 2940 |
| chr5 | 1740718 | 0.96% | 3736 |
| chr6 | 1672601 | 0.98% | 3763 |
| chr7 | 1391010 | 0.87% | 3061 |
| chr8 | 1239691 | 0.85% | 2805 |
| chr9 | 1243224 | 0.90% | 2728 |
| chr10 | 1255197 | 0.94% | 2853 |
| chr11 | 1712372 | 1.27% | 3580 |
| chr12 | 1577766 | 1.18% | 3371 |
| chr13 | 673140 | 0.59% | 1574 |
| chr14 | 882478 | 0.82% | 1934 |
| chr15 | 1093471 | 1.07% | 2319 |
| chr16 | 900807 | 1.00% | 1987 |
| chr17 | 1412155 | 1.70% | 2925 |
| chr18 | 564630 | 0.70% | 1296 |
| chr19 | 926345 | 1.58% | 2156 |
| chr20 | 664639 | 1.03% | 1478 |
| chr21 | 325292 | 0.70% | 762 |
| chr22 | 510736 | 1.01% | 1141 |
| chrX | 459178 | 0.29% | 1236 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 62864 | 128 | 8963 | 451.88 | 356 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF421NDL.bed.gz | 1.43 MB | 178d048f405e026de08e00cf8d07660b |
| ENCFF421NDL.tabix.bed.gz | 654.88 KB | 6373a69be2da873a354310480523721f |
| ENCFF421NDL.tabix.bed.gz.tbi | 210.93 KB | c946bb8a5be66f4d97ab0d3d7e7755a2 |
| genomic_resource.yaml | 2.6 KB | 9d0f675bed5702a6a78f618063d83c3c |
| statistics/ |