Resource

Id Histone_ChIP-seq/ENCSR060MAUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR060MAU [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR060MAU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:35.228349+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR060MAU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR060MAU float

Histone_ChIP-seq_ENCSR060MAU
Histone_ChIP-seq ENCSR060MAU [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR060MAU [1.64, 33.2]
n
42,862,937
mean
14.1
sd
7.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428629371.33% 28525
chr1 4147706 1.67% 2707
chr2 3066905 1.27% 2065
chr3 2642159 1.33% 1700
chr4 1861502 0.98% 1180
chr5 2196509 1.21% 1436
chr6 2606726 1.53% 1700
chr7 2093434 1.31% 1451
chr8 1707891 1.18% 1127
chr9 1773544 1.28% 1192
chr10 1883233 1.41% 1256
chr11 2250529 1.67% 1476
chr12 2213119 1.66% 1437
chr13 1079704 0.94% 732
chr14 1408962 1.32% 924
chr15 1343858 1.32% 892
chr16 1540090 1.70% 1051
chr17 2262825 2.72% 1477
chr18 883374 1.10% 609
chr19 2373530 4.05% 1642
chr20 1040582 1.61% 736
chr21 441367 0.94% 315
chr22 837612 1.65% 590
chrX 1207776 0.77% 830
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28525 215 26795 1502.64 1233
global segment-length histogram

Files

Filename Size md5
ENCFF751BEG.bed.gz 727.79 KB 498e89de7f7bee8b352bd58f452193b6
ENCFF751BEG.tabix.bed.gz 323.41 KB 050beb6a632c0fb04048d7288ede7be8
ENCFF751BEG.tabix.bed.gz.tbi 179.81 KB c586bae6aefe701912310f7295e8756f
genomic_resource.yaml 1.77 KB 5b035f1b848fbfae09e27d061117cc60
statistics/