Resource

Id Histone_ChIP-seq/ENCSR057BWOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR057BWO [biosample_summary="Homo sapiens GM12878" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR057BWO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2014-10-24T16:20:43.113202+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR057BWO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR057BWO float

Histone_ChIP-seq_ENCSR057BWO
Histone_ChIP-seq ENCSR057BWO [biosample_summary="Homo sapiens GM12878" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR057BWO [1.69, 21.2]
n
53,117,992
mean
7.55
sd
3.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 531179921.65% 43428
chr1 5279130 2.12% 4312
chr2 3862062 1.59% 3260
chr3 3081497 1.55% 2521
chr4 2020494 1.06% 1661
chr5 2714921 1.50% 2174
chr6 3373600 1.98% 2686
chr7 2456649 1.54% 2106
chr8 2034013 1.40% 1746
chr9 2103786 1.52% 1708
chr10 2306294 1.72% 1966
chr11 2677687 1.98% 2098
chr12 2898494 2.17% 2305
chr13 1120751 0.98% 947
chr14 1877007 1.75% 1539
chr15 1850497 1.81% 1533
chr16 2104159 2.33% 1690
chr17 3019550 3.63% 2313
chr18 941882 1.17% 807
chr19 2946421 5.03% 2323
chr20 1376452 2.14% 1105
chr21 548703 1.17% 470
chr22 1219518 2.40% 980
chrX 1304425 0.84% 1178
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43428 185 15082 1223.13 809
global segment-length histogram

Files

Filename Size md5
ENCFF998CEU.bed.gz 1.12 MB c92f4a65f6c3eb9c73b21e1a7f019249
ENCFF998CEU.tabix.bed.gz 484.87 KB c07e03a867358378173ba208e4919e32
ENCFF998CEU.tabix.bed.gz.tbi 167.87 KB e816d33de17625fd03540b299efc091e
genomic_resource.yaml 1.59 KB e5b4eac7b4da0937f8d4f339be0e8eef
statistics/