Resource
| Id | Histone_ChIP-seq/ENCSR057BTG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR057BTG [biosample_summary="Homo sapiens H1" and target="H3K14ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN150NGL|/analyses/ENCAN150NGL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF789OYE|/files/ENCFF789OYE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18887044 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K14ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR057BTG | float |
Histone_ChIP-seq_ENCSR057BTG |
Histone_ChIP-seq ENCSR057BTG [biosample_summary="Homo sapiens H1" and target="H3K14ac"]
|
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[1.85, 8.42] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1506572 | 0.05% | 8266 |
| chr1 | 139518 | 0.06% | 762 |
| chr2 | 119574 | 0.05% | 665 |
| chr3 | 82261 | 0.04% | 461 |
| chr4 | 67131 | 0.04% | 379 |
| chr5 | 75746 | 0.04% | 416 |
| chr6 | 77913 | 0.05% | 431 |
| chr7 | 77050 | 0.05% | 438 |
| chr8 | 65049 | 0.04% | 360 |
| chr9 | 62544 | 0.05% | 342 |
| chr10 | 67903 | 0.05% | 372 |
| chr11 | 70220 | 0.05% | 381 |
| chr12 | 106477 | 0.08% | 574 |
| chr13 | 39676 | 0.03% | 218 |
| chr14 | 48142 | 0.04% | 257 |
| chr15 | 39775 | 0.04% | 219 |
| chr16 | 57659 | 0.06% | 307 |
| chr17 | 101927 | 0.12% | 545 |
| chr18 | 32401 | 0.04% | 185 |
| chr19 | 66136 | 0.11% | 345 |
| chr20 | 37191 | 0.06% | 203 |
| chr21 | 20234 | 0.04% | 114 |
| chr22 | 36180 | 0.07% | 201 |
| chrX | 15479 | 0.01% | 89 |
| chrY | 386 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 8266 | 125 | 783 | 182.26 | 162 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF879VSE.bed.gz | 157.42 KB | 291624f94ce4860d1b76c824ca44d864 |
| ENCFF879VSE.tabix.bed.gz | 83.98 KB | 15260f63c6cbc76847247cf4f459e36f |
| ENCFF879VSE.tabix.bed.gz.tbi | 73.36 KB | e7c0e13a527f575439a184b1d6f6bd14 |
| genomic_resource.yaml | 1.85 KB | 275d63ec53f3090260513fb909e7a12a |
| statistics/ |
