Resource
| Id | Histone_ChIP-seq/ENCSR056PCC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR056PCC [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR056PCC | float |
Histone_ChIP-seq_ENCSR056PCC |
Histone_ChIP-seq ENCSR056PCC [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9ac"]
|
 |
[1.18, 85] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 102421191 | 3.18% | 106503 |
| chr1 | 9915420 | 3.98% | 10385 |
| chr1_KI270712v1_random | 820 | 0.47% | 2 |
| chr1_KI270713v1_random | 2844 | 6.98% | 4 |
| chr2 | 6617532 | 2.73% | 7025 |
| chr3 | 4932206 | 2.49% | 5149 |
| chr3_GL000221v1_random | 524 | 0.34% | 1 |
| chr4 | 3116672 | 1.64% | 3248 |
| chr4_GL000008v2_random | 267 | 0.13% | 1 |
| chr5 | 4347162 | 2.39% | 4256 |
| chr6 | 4617047 | 2.70% | 4514 |
| chr7 | 4892831 | 3.07% | 5307 |
| chr8 | 3955267 | 2.73% | 4093 |
| chr9 | 4617169 | 3.34% | 4766 |
| chr9_KI270719v1_random | 260 | 0.15% | 1 |
| chr10 | 4467526 | 3.34% | 4768 |
| chr11 | 5396944 | 4.00% | 5578 |
| chr11_KI270721v1_random | 910 | 0.91% | 2 |
| chr12 | 4982833 | 3.74% | 5033 |
| chr13 | 1786610 | 1.56% | 1738 |
| chr14 | 3453309 | 3.23% | 3468 |
| chr14_GL000009v2_random | 558 | 0.28% | 1 |
| chr14_GL000194v1_random | 1210 | 0.63% | 2 |
| chr14_KI270723v1_random | 799 | 2.10% | 1 |
| chr15 | 3164799 | 3.10% | 3355 |
| chr15_KI270727v1_random | 527 | 0.12% | 2 |
| chr16 | 5522310 | 6.11% | 5946 |
| chr16_KI270728v1_random | 726 | 0.04% | 1 |
| chr17 | 7391223 | 8.88% | 7681 |
| chr17_GL000205v2_random | 11632 | 6.27% | 10 |
| chr18 | 1544740 | 1.92% | 1573 |
| chr19 | 7138156 | 12.18% | 7144 |
| chr20 | 3356291 | 5.21% | 3802 |
| chr21 | 1396337 | 2.99% | 1540 |
| chr22 | 3700630 | 7.28% | 4181 |
| chr22_KI270731v1_random | 262 | 0.17% | 1 |
| chr22_KI270733v1_random | 7928 | 4.41% | 12 |
| chrUn_GL000195v1 | 3681 | 2.01% | 5 |
| chrUn_GL000216v2 | 253 | 0.14% | 1 |
| chrUn_GL000219v1 | 4340 | 2.42% | 3 |
| chrUn_GL000220v1 | 7488 | 4.63% | 12 |
| chrUn_KI270304v1 | 292 | 13.49% | 1 |
| chrUn_KI270411v1 | 1919 | 72.52% | 2 |
| chrUn_KI270438v1 | 4081 | 3.63% | 5 |
| chrUn_KI270544v1 | 833 | 69.30% | 2 |
| chrUn_KI270744v1 | 1686 | 1.00% | 2 |
| chrUn_KI270753v1 | 549 | 0.87% | 1 |
| chrX | 2052217 | 1.32% | 1875 |
| chrY | 1571 | <0.01% | 3 |
| 3318 contigs with no values (123899175 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106503 | 250 | 26189 | 961.67 | 485 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF543LWX.bed.gz | 2.2 MB | 77c25d132d2dba8381a9ef220c4f477c |
| ENCFF543LWX.tabix.bed.gz | 1.05 MB | 026bc27451f1fa2d16f3dd56a0084c64 |
| ENCFF543LWX.tabix.bed.gz.tbi | 262.31 KB | cee5f41fde4a836d69973125955a9d19 |
| genomic_resource.yaml | 3.11 KB | a4ce6b14de55c95b863d5881e79e5c78 |
| statistics/ |